PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g41670.1.p
Common NameBRADI_2g41670, LOC100844883
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 417aa    MW: 44622.6 Da    PI: 5.6688
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g41670.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.5e-12227272555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h + Er+RR+++N++f +Lr+llP++      K +K ++L+kA  Y+k L+
  Bradi2g41670.1.p 227 HMMSERKRREKLNDSFLTLRSLLPPC-----SKKDKTTVLTKAAGYLKALE 272
                       7789*********************9.....699**************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.154222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-17224295IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9227272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-13227275No hitNo description
Gene3DG3DSA:4.10.280.102.1E-16227289IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-13228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MDDLWCSLDI AGLQSALAAD PLWQPFPDSA VSSIGAGDEN AYFGAGNVDL MLSSPDEANN  60
GMAVDMDASG FFGDDGRFLF QQASTSSSLS SKRSLSIDSG GSSGSFTLDA SPYQAPAPAM  120
AHHPFPGAGV VGDHDDEAIL RAMMAVMSAS ASPSSSASPS ASSRPSHPFR RDEAAAMPMP  180
LPQQHLRGGN NGGHVMVKSS LAMSPPEKTQ EEPSRGAAGG NNGQLYHMMS ERKRREKLND  240
SFLTLRSLLP PCSKKDKTTV LTKAAGYLKA LEAQVWELEE KKRKLERHIP AQEAPLAPQQ  300
SRRAKVQISR SEDVVNLTVM VMVECDVVEL VLRVLECLRW MERISVLSVD ADTYSPKVLL  360
KAIASIKLRI MDGCDWNEAS FREAMTKAVN DATSSPPTTT TTSLPPCARV PLVVTA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235ERKRRE
2231236RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g41670.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703063e-62HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010231939.10.0putative transcription factor bHLH041
TrEMBLI1HNT10.0I1HNT1_BRADI; Uncharacterized protein
STRINGBRADI2G41670.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101743136
Representative plantOGRP1200956
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-15bHLH family protein