PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g29960.5.p
Common NameBRADI_2g29960
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 366aa    MW: 39915.8 Da    PI: 4.7628
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g29960.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18114164155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++++GVr++  +g+WvAeIr+p   + r  r +lg+f tae Aa a+++a+++++g
  Bradi2g29960.5.p 114 CKFRGVRQRT-WGKWVAEIREP---N-RvSRLWLGTFPTAETAACAYDEAARAMYG 164
                       79*****999.**********8...2.58************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.11E-29114174No hitNo description
PfamPF008478.5E-12114164IPR001471AP2/ERF domain
SuperFamilySSF541715.56E-20115173IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.7E-30115172IPR001471AP2/ERF domain
SMARTSM003806.2E-36115178IPR001471AP2/ERF domain
PROSITE profilePS5103221.232115172IPR001471AP2/ERF domain
PRINTSPR003672.3E-9116127IPR001471AP2/ERF domain
PRINTSPR003672.3E-9138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MTAMGPSCSA LEKMAHITVC VSAGSCTLPC NECELSAQQT PKGVAPVASI LRKKRPRRSR  60
DGPNSVSETI RRWKEVNQQL EHDPEGAKRA RKPPAKGSKK GCMQGKGGPE NTRCKFRGVR  120
QRTWGKWVAE IREPNRVSRL WLGTFPTAET AACAYDEAAR AMYGPLARTN FTIQDVPTPA  180
VDIPAVVQRL LPGGSTSCES TMTSNHSGIV ASSRVLEISS SLKQSDVGSE HDQRSNQYSS  240
PQAGSSVARS RADDLFEPLE PIANLPDGED DGFDIEELLR MMEADPVEAA EPMVENSWTG  300
FQDVGANTVV DFDQQEPSYL DDFNPSMLEG MLQLAEPFPT CISEDRVMFN PGLRDADLSE  360
FFEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-14116174362ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g29960.5.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY7813491e-134AY781349.1 Triticum aestivum DREB transcription factor 3A (DREB3) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568656.10.0dehydration-responsive element-binding protein 2B isoform X1
SwissprotQ5W6R49e-81DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLA0A0Q3G6160.0A0A0Q3G616_BRADI; Uncharacterized protein
STRINGBRADI2G29960.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.12e-37ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]