PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi2g29960.2.p
Common NameBRADI_2g29960, LOC100845690
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 336aa    MW: 36942.2 Da    PI: 4.6878
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi2g29960.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1884134155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       ++++GVr++  +g+WvAeIr+p   + r  r +lg+f tae Aa a+++a+++++g
  Bradi2g29960.2.p  84 CKFRGVRQRT-WGKWVAEIREP---N-RvSRLWLGTFPTAETAACAYDEAARAMYG 134
                       79*****999.**********8...2.58************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.01E-2984144No hitNo description
PfamPF008477.5E-1284134IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-2085143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-3085142IPR001471AP2/ERF domain
SMARTSM003806.2E-3685148IPR001471AP2/ERF domain
PROSITE profilePS5103221.23285142IPR001471AP2/ERF domain
PRINTSPR003672.0E-98697IPR001471AP2/ERF domain
PRINTSPR003672.0E-9108124IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MTVDQRSVAA APLEIPALQP GRKKRPRRSR DGPNSVSETI RRWKEVNQQL EHDPEGAKRA  60
RKPPAKGSKK GCMQGKGGPE NTRCKFRGVR QRTWGKWVAE IREPNRVSRL WLGTFPTAET  120
AACAYDEAAR AMYGPLARTN FTIQDVPTPA VDIPAVVQRL LPGGSTSCES TMTSNHSGIV  180
ASSRVLEISS SLKQSDVGSE HDQRSNQYSS PQAGSSVARS RADDLFEPLE PIANLPDGED  240
DGFDIEELLR MMEADPVEAA EPMVENSWTG FQDVGANTVV DFDQQEPSYL DDFNPSMLEG  300
MLQLAEPFPT CISEDRVMFN PGLRDADLSE FFEGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1374141371Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3' of the cis-acting dehydration-responsive element (DRE). Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Involved in drought and heat-shock stress tolerance. {ECO:0000269|PubMed:20049613}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi2g29960.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, high-salt and drought stresses. {ECO:0000269|PubMed:20049613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF7545821e-134JF754582.1 Leymus chinensis dehydration-responsive element binding protein 2A (DREB2) mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003568655.10.0dehydration-responsive element-binding protein 2B isoform X2
SwissprotQ5W6R42e-90DRE2B_ORYSJ; Dehydration-responsive element-binding protein 2B
TrEMBLI1HKG30.0I1HKG3_BRADI; Uncharacterized protein
STRINGBRADI2G29960.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-37ERF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]