PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g69617.3.p
Common NameBRADI_1g69617
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family NAC
Protein Properties Length: 842aa    MW: 94871.1 Da    PI: 4.7079
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g69617.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.72.3e-19691981128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk....leleevikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWka 85 
                       lp+G++F+P+d++lv  +L++++ +        ++++i+++d     + ++P+d+p  ++++ +  yfF+k+ k y++++ k        W++
  Bradi1g69617.3.p  69 LPRGVEFNPSDSDLV-WHLAAEIGNGLahrhPFISDFIRSTDedggFCCTHPKDIP-GMRQDGHASYFFHKKLKLYNNENGKY-----ICWQK 154
                       699************.6788887766545542233456555445669*********.667788899********997643333.....35*** PP

               NAM  86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                       +g +++++  +g+l g+ +++v+y  k++++++++tdW +h+y++
  Bradi1g69617.3.p 155 SGASRSIIL-DGSLQGCMEVFVLYafKKSDNSPQRTDWKLHQYHI 198
                       *********.999***********8878999999*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-2662216IPR003441NAC domain
PROSITE profilePS5100523.21569216IPR003441NAC domain
PfamPF023652.6E-870198IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MASDVDSPPS RLGSDPVSDP LPLAERRTGF LRPPPPRRME PSPPTPDRFE ASPAPEGTGG  60
AASQTWPGLP RGVEFNPSDS DLVWHLAAEI GNGLAHRHPF ISDFIRSTDE DGGFCCTHPK  120
DIPGMRQDGH ASYFFHKKLK LYNNENGKYI CWQKSGASRS IILDGSLQGC MEVFVLYAFK  180
KSDNSPQRTD WKLHQYHIKN TMEDEGELVV SKIFYKSEKH CCEWAAKAPV QCAQDDSVTE  240
NDSKEDNVEA QLENCSVNMA TDGDGNNQEQ LLIEMYPDQD KLSFSKDVLD TTYINHENQI  300
NDHTETDLDH ISLQERYRIL LAEKNSLSAM VSAEKCVMND SENTSRQMGA ETSRYHEGTA  360
YREDICSILQ EISSAPPITD SMDTDNNMWL MGEIPQDNEI SSMECLAGNN EIPHDPAEDT  420
ECPVNGKNLN SSVELLPSQT PTGGDENAHL AVRNAGSYLV DVKRETALEG YEINASEYPR  480
ANGTHAAGSP SLGVKSEVTG CEFPGLCENN SINAFEPIVN KTHARTLNHN GGLAYCSHQR  540
KKRKIATDSS KKVLEEDAYR NDENIAYPSR RRRKKKTATD SIEKALEEDA PGLLQILMDR  600
GIMVKEIKLY DVEEDDEMLP DCTESDFQDL ENVITKLFPP RVSLLKSTAR HLKGEKAIYC  660
LACLISLIEQ SRYLQFRDCP VEWGWCRDLQ SFVFVFRSHN RLVLERPEYG YATYFFEIVQ  720
SVPIEWQIRR LVVAMKLSSC GRTALIENRP LLVGEDLTEG EAHVLEEYGW IPNTGLGTML  780
NYRDRVVHDR WNEKYSTDWK MKIGKLLMNG YSEGQLIITH NPLKLETLPE DSEDIKLEDP  840
F*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1569575RRRRKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g69617.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010228959.10.0uncharacterized protein LOC100826588 isoform X3
TrEMBLA0A0Q3LI730.0A0A0Q3LI73_BRADI; Uncharacterized protein
STRINGBRADI1G69617.20.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-40NAC family protein