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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g43840.4.p | ||||||||
Common Name | BRADI_1g43840, LOC100834693 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 459aa MW: 51509.8 Da PI: 4.3736 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.3 | 1.8e-33 | 35 | 174 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 lp+G++F+P+d+el+++ L+k+ ++ ++++ ++e +i++++P++Lp +k++ + +fF+++ k+y+tg+rk+r ++ + Bradi1g43840.4.p 35 LPKGVKFDPSDQELLSHLLAKHDKAGAephpfIDEFIPtVEEDdGICYTHPQKLP-GLKQDGSVSHFFHRTYKAYNTGTRKRRRINtgdlaDV 126 799************988877644444555443332322444435**********.667788899******************7552344467 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+k+v++ +g++ g+kk++v+y + + k++kt+Wvmh+y+l Bradi1g43840.4.p 127 RWHKTGKTKPVMV-DGKHLGCKKIMVLYmsTVKGGKPKKTNWVMHQYHL 174 8************.999***********6644666777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-38 | 20 | 193 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.534 | 35 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.9E-15 | 36 | 174 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 459 aa Download sequence Send to blast |
MDLSKQKWVS NPTKECPRCS HIIDNSDVVH QWPGLPKGVK FDPSDQELLS HLLAKHDKAG 60 AEPHPFIDEF IPTVEEDDGI CYTHPQKLPG LKQDGSVSHF FHRTYKAYNT GTRKRRRINT 120 GDLADVRWHK TGKTKPVMVD GKHLGCKKIM VLYMSTVKGG KPKKTNWVMH QYHLGTGEDE 180 QNGEYVVSKL FFQQQFKPGE KYAEELTTAD ALETIAAEAD LPDLPEPALD EQGEEHISSI 240 TNQEVLHNNE HTADREALPY QQFKPGEKNA QELTTADALE TIAAEEDLPD LPEPALDERE 300 EDICSITNQE VLHNNEHTAD PEALPYQESR NCDITMEEKA AEEDAAYPSS EKPEDGDNPS 360 SQDPKWWDGE SQFLLTSQQL AESLPCLDEF LQSQTSGDEQ DTIKPKLADY ANLPVEDLKQ 420 DLEKCHELGL SDADFRLSQI EFSQDSCTAA WAGGNMLD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 112 | 116 | RKRRR |
2 | 113 | 117 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g43840.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP729147 | 1e-109 | KP729147.1 Stipa purpurea microsatellite ZH4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227769.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | I1GZ50 | 0.0 | I1GZ50_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G43840.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-121 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g43840.4.p |
Entrez Gene | 100834693 |