PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g43840.2.p | ||||||||
Common Name | BRADI_1g43840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 463aa MW: 51874.4 Da PI: 4.4073 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.3 | 1.9e-33 | 39 | 178 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sg 81 lp+G++F+P+d+el+++ L+k+ ++ ++++ ++e +i++++P++Lp +k++ + +fF+++ k+y+tg+rk+r ++ + Bradi1g43840.2.p 39 LPKGVKFDPSDQELLSHLLAKHDKAGAephpfIDEFIPtVEEDdGICYTHPQKLP-GLKQDGSVSHFFHRTYKAYNTGTRKRRRINtgdlaDV 130 799************988877644444555443332322444435**********.667788899******************7552344467 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +W++tgk+k+v++ +g++ g+kk++v+y + + k++kt+Wvmh+y+l Bradi1g43840.2.p 131 RWHKTGKTKPVMV-DGKHLGCKKIMVLYmsTVKGGKPKKTNWVMHQYHL 178 8************.999***********6644666777*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.93E-37 | 31 | 197 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 31.534 | 39 | 197 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.0E-15 | 40 | 178 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MTGTSWLIDS QRIASKIKNV SGSMDLSKQK WVVHQWPGLP KGVKFDPSDQ ELLSHLLAKH 60 DKAGAEPHPF IDEFIPTVEE DDGICYTHPQ KLPGLKQDGS VSHFFHRTYK AYNTGTRKRR 120 RINTGDLADV RWHKTGKTKP VMVDGKHLGC KKIMVLYMST VKGGKPKKTN WVMHQYHLGT 180 GEDEQNGEYV VSKLFFQQQF KPGEKYAEEL TTADALETIA AEADLPDLPE PALDEQGEEH 240 ISSITNQEVL HNNEHTADRE ALPYQQFKPG EKNAQELTTA DALETIAAEE DLPDLPEPAL 300 DEREEDICSI TNQEVLHNNE HTADPEALPY QESRNCDITM EEKAAEEDAA YPSSEKPEDG 360 DNPSSQDPKW WDGESQFLLT SQQLAESLPC LDEFLQSQTS GDEQDTIKPK LADYANLPVE 420 DLKQDLEKCH ELGLSDADFR LSQIEFSQDS CTAAWAGGNM LD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 116 | 120 | RKRRR |
2 | 117 | 121 | KRRRI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g43840.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP729147 | 1e-109 | KP729147.1 Stipa purpurea microsatellite ZH4 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227769.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A0Q3H6S9 | 0.0 | A0A0Q3H6S9_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G43840.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-116 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g43840.2.p |