PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g37720.1.p
Common NameBRADI_1g37720, LOC100838765
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 349aa    MW: 38014.6 Da    PI: 4.4212
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g37720.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.51.3e-30491392101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl k+++++ed+++++++sw +  nsfvv+d++ fa ++Lp +Fkh nf+SF+RQLn+YgF+kv+ ++         weF++  F  g+++ll
  Bradi1g37720.1.p  49 FLAKTFDMVEDPATDSVVSWGAARNSFVVWDPHAFAARLLPLHFKHANFSSFLRQLNTYGFRKVNPDR---------WEFANAGFLGGQRHLL 132
                       9********************999*****************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                         i+r++
  Bradi1g37720.1.p 133 AGIRRRR 139
                       *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.4E-5145138IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.109.7E-3446138IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-3046138IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.6E-2749138IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-164972IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-168799IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434088112IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-16100112IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:3.20.20.707.8E-4215294IPR013785Aldolase-type TIM barrel
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003824Molecular Functioncatalytic activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEYSAILTDV KQEEPELVVL DDAGDEDDGC LLVPPTPMDL SASAAVAPFL AKTFDMVEDP  60
ATDSVVSWGA ARNSFVVWDP HAFAARLLPL HFKHANFSSF LRQLNTYGFR KVNPDRWEFA  120
NAGFLGGQRH LLAGIRRRRG ADRRPACPSS SSAAEVGGVV EGELERLRRD REALARELAR  180
LKRQQEESRA ALLDMERRVQ GTERRQEQCK AFLARAVRNP NFLDNLASRN GIGIAPVEDG  240
CKKKRKMLDA GMTPTPADGI TFEEMALAAG VDVIATSQSA VDGGGSGVTT DMVWYELLGE  300
EQTEIDVELD ELVAAAAAAD AEPWEEIGDE EVQELVHQID CFAGSPSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hdg_A9e-22461387110Heat shock factor protein 1
5hdn_A9e-22461387110Heat shock factor protein 1
5hdn_B9e-22461387110Heat shock factor protein 1
5hdn_C9e-22461387110Heat shock factor protein 1
5hdn_D9e-22461387110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g37720.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3727010.0AK372701.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3009M23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014754610.10.0putative heat stress transcription factor A-6a
SwissprotQ5Z6A41e-107HFA6A_ORYSJ; Putative heat stress transcription factor A-6a
TrEMBLI1GXX30.0I1GXX3_BRADI; Uncharacterized protein
STRINGBRADI1G37720.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Representative plantOGRP1403244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-49heat shock transcription factor A2