PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g37540.2.p
Common NameBRADI_1g37540
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 523aa    MW: 54950.9 Da    PI: 7.1783
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g37540.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.83e-11329373554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h + ErrRR+r+N++f+ Lr llP+       K +Ka +L  ++eY++ L
  Bradi1g37540.2.p 329 HMISERRRRERLNDSFQCLRALLPPG-----SKKDKANVLASTTEYMNTL 373
                       8899********************95.....599************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.64324373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-15324392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.36E-11326378No hitNo description
Gene3DG3DSA:4.10.280.101.0E-14328394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-9329373IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-11330379IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 523 aa     Download sequence    Send to blast
MDAIFALAAA PRARVLERAA ARVPGCLYLC LWLITACIGL IVDSHLFCLD AWIGGGAGGD  60
RARAMFEAYR GALCAVISGC VPGWAYKEGR ASMELPEPNL TAAASLQVQH QFYHEAGTKM  120
AVFMGCDSGE IEIGLSSTMV AATAAVADHV LQSLLEELLQ PPPPTQPSSS SSSMPSLSVG  180
SPEYSSLTIR SMATPPPAVV ASSAGEPSTQ APPPGGLPTQ YEFPSDAAMA PQAMLAAIAS  240
TSTPPPRSSL PERRPMAFKA YAAALSPRAP RAPRRPGAGQ RMIKTCIALL ASAHAATRAR  300
ELAAAHGKEG AAQQQQPPAP TTTASQLHHM ISERRRRERL NDSFQCLRAL LPPGSKKDKA  360
NVLASTTEYM NTLVSQVACL REKNLQLEAQ LAGLNPCPPT SGDDGGGPSE KIEVDVATTG  420
ASTSTPSQQQ PREVSVKITV RAECDMPEVL ISLLTWLKET GSATVVSVEA RQHSGVALAQ  480
ASLTLRIPEA GDIVDLTRLK EALTKVLEDA VTPPPRRQPE SP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332337ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g37540.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3616668e-51AK361666.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1146D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560643.10.0putative transcription factor bHLH041
TrEMBLA0A0Q3K1510.0A0A0Q3K151_BRADI; Uncharacterized protein
STRINGBRADI1G37540.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Representative plantOGRP85811114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.14e-25bHLH family protein