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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bradi1g12900.1.p |
Common Name | BRADI_1g12900, LOC104581985 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family |
Trihelix |
Protein Properties |
Length: 342aa MW: 37200.6 Da PI: 8.488 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bradi1g12900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 64 | 3.3e-20 | 46 | 124 | 2 | 81 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81
Wt e+++Liea+++++++ + + ++W++v +++++ g++rs++qC+++w+nl ++ykk++++e+++ + +ss +++
Bradi1g12900.1.p 46 WTLPETMVLIEAKKRVHSERHPADQGLARWRWVEDYCWRAGCRRSQNQCNDRWDNLMRDYKKVRAHEQQH-AAASSYWAM 124
*********************************************************************9.555557765 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 342 aa
Download sequence Send
to blast |
MDMKQQGSAG VMERSGQQGD QDAGRNLSAA GAMTLATVRE YRRGNWTLPE TMVLIEAKKR 60 VHSERHPADQ GLARWRWVED YCWRAGCRRS QNQCNDRWDN LMRDYKKVRA HEQQHAAASS 120 YWAMARAERK ERCLPSNLLR EIYEAMGEIV ESRRRLSCYG GSGSGSGVLF LGAPLTATNV 180 GADIPAMQAS PLAQVPPPRP FEQGTHCSAS ESPERKRLRQ SLDGQPRSST PAAASASAGI 240 HHQEAQPLQE DDESSGEDED ALGGAIGRGA AILSGALESR EAAEERRHRE LMAVEERRSV 300 ARQARREAGE QCVAGLAAAV SQLAGSMFAL AAKRKGPAAP K*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT083602 | 3e-71 | BT083602.1 Zea mays full-length cDNA clone ZM_BFb0018E14 mRNA, complete cds. |