PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g08891.5.p
Common NameBRADI_1g08891, LOC100830670
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 343aa    MW: 37129.2 Da    PI: 6.4329
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g08891.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.73.7e-33121022101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sws  gnsfvv+d + f++ +Lp+yFkh nf+SFvRQLn+YgF+kv+ ++         weF+ + F +g+kell
  Bradi1g08891.5.p  12 FLTKTYDVVSDHSTDTVVSWSVAGNSFVVWDAHAFSRVLLPRYFKHGNFSSFVRQLNTYGFRKVDPDR---------WEFAAEGFLRGQKELL 95 
                       9****************************************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r++
  Bradi1g08891.5.p  96 KTIRRRR 102
                       *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467853.4E-328101IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-558101IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.105.4E-368101IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.1E-181235IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-3012101IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-185062IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405175IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-186375IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDGLGEAGPT PFLTKTYDVV SDHSTDTVVS WSVAGNSFVV WDAHAFSRVL LPRYFKHGNF  60
SSFVRQLNTY GFRKVDPDRW EFAAEGFLRG QKELLKTIRR RRPLSSSSSA QQQQQQGAAA  120
GCLEVGQFGH EGEVHRLKRD KGVLISEVVK LRQEQQATRA QMQAMEARIV ATEQKQQQMT  180
VFLARAMKSP GFLQMLIDRQ QGQGPQGHLG PGQAQLRREL EDALSKKRRR PIDYLLPRNG  240
DTSAASYSAA AAAAAARDYV PGLADGHARA EDGRSGGGED TESFWMELLS LGLEEKQGGG  300
AGGGSGSGEG GGAETDNEVD DEVDVLVQSL YHLSPGGAHN AE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-27310117129Heat shock factor protein 1
5d5v_B7e-27310117129Heat shock factor protein 1
5d5v_D7e-27310117129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g08891.5.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3570220.0AK357022.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1044E17.
GenBankAK3578550.0AK357855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1063H19.
GenBankAK3583800.0AK358380.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075F04.
GenBankAK3770820.0AK377082.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3147M16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311203.10.0heat stress transcription factor A-2a isoform X2
SwissprotQ84MN71e-138HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A2K2DIQ00.0A0A2K2DIQ0_BRADI; Uncharacterized protein
STRINGBRADI1G08890.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.15e-74heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]