PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g08891.1.p
Common NameBRADI_1g08891, LOC100830670
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family HSF
Protein Properties Length: 386aa    MW: 41598.1 Da    PI: 5.471
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g08891.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.44.6e-33551452101
                       HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS
      HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 
                       Fl+k+y++++d+++++++sws  gnsfvv+d + f++ +Lp+yFkh nf+SFvRQLn+YgF+kv+ ++         weF+ + F +g+kell
  Bradi1g08891.1.p  55 FLTKTYDVVSDHSTDTVVSWSVAGNSFVVWDAHAFSRVLLPRYFKHGNFSSFVRQLNTYGFRKVDPDR---------WEFAAEGFLRGQKELL 138
                       9****************************************************************999.........**************** PP

                       XXXXXXX CS
      HSF_DNA-bind  95 ekikrkk 101
                       ++i+r++
  Bradi1g08891.1.p 139 KTIRRRR 145
                       *****97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.7E-3651144IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-3251144IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5551144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-185578IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.4E-3055144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-1893105IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434094118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-18106118IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 386 aa     Download sequence    Send to blast
MYPFSGIVKE EEFDFAGAYY AAEDGGSPSS WAAGAGASEL PRPMDGLGEA GPTPFLTKTY  60
DVVSDHSTDT VVSWSVAGNS FVVWDAHAFS RVLLPRYFKH GNFSSFVRQL NTYGFRKVDP  120
DRWEFAAEGF LRGQKELLKT IRRRRPLSSS SSAQQQQQQG AAAGCLEVGQ FGHEGEVHRL  180
KRDKGVLISE VVKLRQEQQA TRAQMQAMEA RIVATEQKQQ QMTVFLARAM KSPGFLQMLI  240
DRQQGQGPQG HLGPGQAQLR RELEDALSKK RRRPIDYLLP RNGDTSAASY SAAAAAAAAR  300
DYVPGLADGH ARAEDGRSGG GEDTESFWME LLSLGLEEKQ GGGAGGGSGS GEGGGAETDN  360
EVDDEVDVLV QSLYHLSPGG AHNAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B1e-263614410129Heat shock factor protein 1
5d5v_B1e-263614410129Heat shock factor protein 1
5d5v_D1e-263614410129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g08891.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3570220.0AK357022.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1044E17.
GenBankAK3578550.0AK357855.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1063H19.
GenBankAK3583800.0AK358380.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1075F04.
GenBankAK3770820.0AK377082.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3147M16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559435.10.0heat stress transcription factor A-2a isoform X1
RefseqXP_014751958.10.0heat stress transcription factor A-2a isoform X1
RefseqXP_014751960.10.0heat stress transcription factor A-2a isoform X1
SwissprotQ84MN71e-151HFA2A_ORYSJ; Heat stress transcription factor A-2a
TrEMBLA0A0Q3KQ670.0A0A0Q3KQ67_BRADI; Uncharacterized protein
STRINGBRADI1G08890.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30837231
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-76heat shock transcription factor A2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]
  3. Mittal D,Madhyastha DA,Grover A
    Gene expression analysis in response to low and high temperature and oxidative stresses in rice: combination of stresses evokes different transcriptional changes as against stresses applied individually.
    Plant Sci., 2012. 197: p. 102-13
    [PMID:23116677]