PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.30275s0051.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | ARR-B | ||||||||
Protein Properties | Length: 678aa MW: 74371.2 Da PI: 6.5149 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 90.8 | 1.2e-28 | 210 | 263 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+ Bostr.30275s0051.1.p 210 KPRVVWSVELHQQFVAAVNQL-GVDKAVPKKILEMMNVPGLTRENVASHLQKYRI 263 79*******************.********************************7 PP | |||||||
2 | Response_reg | 76.4 | 1e-25 | 25 | 133 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedal 87 vl+vdD+p+ +++l+++l+ y +v+ + +e al ll++++ +D+++ D+ mp+mdG++ll+ e +lp+i+++a ++++ +l Bostr.30275s0051.1.p 25 VLVVDDDPTCLMILERMLRTCLY-RVTKCNRAEIALSLLRKNKngFDIVISDVHMPDMDGFKLLEYVGLEM-DLPVIMMSADDSKSVVL 111 89*********************.***************999889**********************6644.8**************** PP HHHHTTESEEEESS--HHHHHH CS Response_reg 88 ealkaGakdflsKpfdpeelvk 109 + + Ga d+l Kp+ +e+l + Bostr.30275s0051.1.p 112 KGVTHGAVDYLIKPVRIEALKN 133 ******************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.5E-197 | 7 | 669 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 1.28E-34 | 21 | 145 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.8E-40 | 22 | 171 | No hit | No description |
SMART | SM00448 | 2.7E-29 | 23 | 135 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 41.371 | 24 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.2E-22 | 25 | 133 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 9.20E-27 | 26 | 138 | No hit | No description |
PROSITE profile | PS51294 | 11.323 | 207 | 266 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 7.53E-20 | 208 | 267 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.3E-30 | 209 | 268 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 2.9E-24 | 210 | 263 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.1E-8 | 212 | 262 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009873 | Biological Process | ethylene-activated signaling pathway | ||||
GO:0010082 | Biological Process | regulation of root meristem growth | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0071368 | Biological Process | cellular response to cytokinin stimulus | ||||
GO:0080113 | Biological Process | regulation of seed growth | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 678 aa Download sequence Send to blast |
MINPGHGRGP DSGSNSDPFP TGLRVLVVDD DPTCLMILER MLRTCLYRVT KCNRAEIALS 60 LLRKNKNGFD IVISDVHMPD MDGFKLLEYV GLEMDLPVIM MSADDSKSVV LKGVTHGAVD 120 YLIKPVRIEA LKNIWQHVVR KKRNEWTVSE HSGGSIEDTG GDRDRQQQRE DADNNSSSVN 180 EGNWRSSRKR KEEEVDDQGD DKEDTSSLKK PRVVWSVELH QQFVAAVNQL GVDKAVPKKI 240 LEMMNVPGLT RENVASHLQK YRIYLRRLGG VSQHQGNMNH SFMTGQDPNF GPLSSMNGFD 300 LQALAIAGQL PAQSLAQLQA AGLGQPSLTK PGMSVSPLVD QRSIFNFENP KIRYGDGHGQ 360 TINNGNKQMN LLHGVPTGME PKQFAGSHMR VQQKIAGVRP GQNIQSSGMM LPVADQLPRG 420 VPSMLPSLGQ QPMLSSSVSR RSDLTGVVAV RNSIPETNSR VLPATHSVFN NFPQDLPQNS 480 FPLASAPGIS IPVSASYQEE VNSSDVNGGS SASTVATAGY GNPSYDIFND FSQQQQHNNN 540 INNKLNDWDL RNIGLVFSHQ DAAAASAAFS TSEAYSSSST QRKRRETDAT VVAEHGQNQH 600 PPSRNLNHLN HIYMDGGSVR VKSERVAETV TCPPATTLFH EQYNQEDLMS ALLKQEGIPS 660 VDNEFDFDGY SIDNIPV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 7e-22 | 206 | 268 | 1 | 63 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00054 | PBM | Transfer from AT4G16110 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.30275s0051.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ473521 | 0.0 | DQ473521.1 Arabidopsis thaliana ARR2 (ARR2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006286049.2 | 0.0 | two-component response regulator ARR2 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | R0FAB4 | 0.0 | R0FAB4_9BRAS; Two-component response regulator | ||||
STRING | Bostr.30275s0051.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2403 | 27 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.30275s0051.1.p |