PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

ERF

Protein Properties

Length: 164aa MW: 18457.8 Da PI: 10.0106

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.25993s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	65.3	1.2e-20	52	100	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++ a+ k++g Bostr.25993s0004.1.p 52 YRGVRQRP-WGKWAAEIRDPRK---GVRVWLGTFKTAEEAARAYDVAAIKIRG 100 9*****.******954...4***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	2.9E-34	51	109	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.14E-24	51	108	IPR016177	DNA-binding domain
PROSITE profile	PS51032	25.554	51	108	IPR001471	AP2/ERF domain
SMART	SM00380	7.0E-43	51	114	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-12	52	63	IPR001471	AP2/ERF domain
CDD	cd00018	1.01E-36	52	110	No hit	No description
Pfam	PF00847	2.6E-14	52	100	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.8E-12	74	90	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0034059	Biological Process	response to anoxia
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MCGGAIISDF VRSKSSFAES VPSQVGSVSN KKRKPVSVGG QRDGNRERKN LYRGVRQRPW 60 GKWAAEIRDP RKGVRVWLGT FKTAEEAARA YDVAAIKIRG RKAKLNFPNT DTNQNEMISE 120 NKVESLSEEL MAFEDNMSFY QIPFLDDQSV TDLGHLWSFQ DSH*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-23	52	108	6	63	ATERF1
3gcc_A	2e-23	52	108	6	63	ATERF1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.25993s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074645	1e-115	AY074645.1 Arabidopsis thaliana At2g47520/T30B22.18 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006296358.1	4e-97	ethylene-responsive transcription factor ERF071
Swissprot	O22259	3e-90	ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBL	R0G1V4	1e-95	R0G1V4_9BRAS; Uncharacterized protein
STRING	Bostr.25993s0004.1.p	1e-119	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10	28	1650

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47520.1	1e-82	ERF family protein

Link Out ? help Back to Top
Phytozome	Bostr.25993s0004.1.p

Publications ? help Back to Top
Gasch P, et al. Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis. Plant Cell, 2016. 28(1): p. 160-80 [PMID:26668304] Yao Y,Chen X,Wu AM ERF-VII members exhibit synergistic and separate roles in Arabidopsis. Plant Signal Behav, 2017. 12(6): p. e1329073 [PMID:28537474] Eysholdt-Derzsó E,Sauter M Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling. Plant Physiol., 2017. 175(1): p. 412-423 [PMID:28698356] Eysholdt-Derzsó E,Sauter M Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis. Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108 [PMID:29996004]