 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Bostr.25219s0149.1.p |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
| Family |
NF-YC |
| Protein Properties |
Length: 207aa MW: 23082 Da PI: 9.9542 |
| Description |
NF-YC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Bostr.25219s0149.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NF-YC | 46 | 1.1e-14 | 101 | 188 | 12 | 99 |
NF-YC 12 katdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99
++d k ++P+ ri++i+++d+ +i +a l+ ka e+fi ++ ++ + + k++ ++ ++++v + + ++fl d vp++
Bostr.25219s0149.1.p 101 GVEDAKMFRFPMNRIRRIMRSDNSAPQIMQDAVFLVNKATEMFIERFSEEAYESSVKDKKKFIHYKHLSSVVGNDERYKFLADCVPEK 188
57899999*****************************************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 207 aa
Download sequence Send
to blast |
MVSSKKPKEK KARSDGVNKT GSRSTRSSGS KTKKTPNKVS IVKKEPEIYE ISESSSSDSV 60
EEAIRGDEPQ KSNGVVSKGR NGKGGGFPTK TSKNREEDDG GVEDAKMFRF PMNRIRRIMR 120
SDNSAPQIMQ DAVFLVNKAT EMFIERFSEE AYESSVKDKK KFIHYKHLSS VVGNDERYKF 180
LADCVPEKLK AEVALEEWER GMTDAG*
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY086815 | 0.0 | AY086815.1 Arabidopsis thaliana clone 28026 mRNA, complete sequence. |
| GenBank | BT025266 | 0.0 | BT025266.1 Arabidopsis thaliana At1g07980 mRNA, complete cds. |
