PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.22252s0256.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GeBP | ||||||||
Protein Properties | Length: 361aa MW: 40365 Da PI: 5.065 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 97.1 | 1.7e-30 | 81 | 171 | 3 | 98 |
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 ++r+ws +De+++L+G++d+++ktg+++ +d af+e++k+ i++kvsk+ql++Kir+LK Kf++ + +psf++++d+ +f+l Bostr.22252s0256.1.p 81 SRRVWSIDDELIILKGIVDYRNKTGVDYLSDSAAFFEYIKDDIDAKVSKDQLMNKIRKLKMKFRDSLVR-----KPSFTNSQDSATFDL 164 78***************************************************************9999.....9************** PP DUF573 92 skkiWgs 98 ++ iWg+ Bostr.22252s0256.1.p 165 CMAIWGK 171 *****95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.4E-23 | 82 | 170 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 361 aa Download sequence Send to blast |
MMVNKKRLSS GDDFSGTYTC DLEFRLNNSN GFLPPSPPDS PLFNSPENLD SSHAAFEETL 60 SLLKSRKKRK ATKLSSYVPA SRRVWSIDDE LIILKGIVDY RNKTGVDYLS DSAAFFEYIK 120 DDIDAKVSKD QLMNKIRKLK MKFRDSLVRK PSFTNSQDSA TFDLCMAIWG KDKAGCVDVN 180 MDKAKGTKSK VQAFVEHEVV VNGEPENDDG LAEGDSFDKL PFENADKNTE NENGLKENGG 240 AVTNGKPEND DGSAKGNSFD DKLPYENVDK RVEKETGEKE SEEDDTADEL SALQDALETT 300 VFQHLGNYAQ KQMLQKLKTF RAKERKELSG EWKSLLVKEA QLENKKYSFA AKLANAAFHN 360 * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.22252s0256.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641576.1 | 0.0 | GLABROUS1 enhancer-binding protein-like 1 | ||||
TrEMBL | D7L707 | 1e-71 | D7L707_ARALL; Uncharacterized protein | ||||
STRING | Bostr.22252s0256.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17435 | 5 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00270.1 | 3e-32 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Bostr.22252s0256.1.p |