PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22252s0256.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GeBP
Protein Properties Length: 361aa    MW: 40365 Da    PI: 5.065
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22252s0256.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57397.11.7e-3081171398
                DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifel 91 
                           ++r+ws +De+++L+G++d+++ktg+++ +d  af+e++k+ i++kvsk+ql++Kir+LK Kf++   +     +psf++++d+ +f+l
  Bostr.22252s0256.1.p  81 SRRVWSIDDELIILKGIVDYRNKTGVDYLSDSAAFFEYIKDDIDAKVSKDQLMNKIRKLKMKFRDSLVR-----KPSFTNSQDSATFDL 164
                           78***************************************************************9999.....9************** PP

                DUF573  92 skkiWgs 98 
                           ++ iWg+
  Bostr.22252s0256.1.p 165 CMAIWGK 171
                           *****95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.4E-2382170IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MMVNKKRLSS GDDFSGTYTC DLEFRLNNSN GFLPPSPPDS PLFNSPENLD SSHAAFEETL  60
SLLKSRKKRK ATKLSSYVPA SRRVWSIDDE LIILKGIVDY RNKTGVDYLS DSAAFFEYIK  120
DDIDAKVSKD QLMNKIRKLK MKFRDSLVRK PSFTNSQDSA TFDLCMAIWG KDKAGCVDVN  180
MDKAKGTKSK VQAFVEHEVV VNGEPENDDG LAEGDSFDKL PFENADKNTE NENGLKENGG  240
AVTNGKPEND DGSAKGNSFD DKLPYENVDK RVEKETGEKE SEEDDTADEL SALQDALETT  300
VFQHLGNYAQ KQMLQKLKTF RAKERKELSG EWKSLLVKEA QLENKKYSFA AKLANAAFHN  360
*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22252s0256.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023641576.10.0GLABROUS1 enhancer-binding protein-like 1
TrEMBLD7L7071e-71D7L707_ARALL; Uncharacterized protein
STRINGBostr.22252s0256.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1743558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00270.13e-32DNA-binding storekeeper protein-related transcriptional regulator