![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.12659s0064.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 325aa MW: 37228.7 Da PI: 4.8711 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.6 | 6e-27 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l +s Bostr.12659s0064.2.p 9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSTSNRLSLFS 58 79*******************************************98776 PP | |||||||
2 | K-box | 14.7 | 1.2e-06 | 121 | 191 | 9 | 79 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 + +++ e+l++e+ +L++++++ ++e+ ++ + + s+++ + e+qL + l+++ +++++ll ++++ Bostr.12659s0064.2.p 121 AINSDVEELEREICRLRQQVQMAEEELMRYEPDPVRFTSMEDYEVCEKQLLDTLTHVLQRRDHLLSSHLSS 191 5678899**********************************************************998875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.1E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.24 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-28 | 2 | 82 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.32E-34 | 2 | 75 | No hit | No description |
PRINTS | PR00404 | 3.2E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.2E-24 | 10 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010152 | Biological Process | pollen maturation | ||||
GO:0080092 | Biological Process | regulation of pollen tube growth | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 325 aa Download sequence Send to blast |
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFST SNRLSLFSGK 60 TRIEDVFTRF INLPKQERES AYYFPDHSRR PDIQSKECLL RILQQLKTEN DIALQNTNPA 120 AINSDVEELE REICRLRQQV QMAEEELMRY EPDPVRFTSM EDYEVCEKQL LDTLTHVLQR 180 RDHLLSSHLS SYEASTMQQS IAGPFVNDVI EGWLPESGHN QAHLFDASAH SNQLRELSSA 240 MYEPLLQGSS SSSNQNNMSE CYVTNHNGEM FPEWAQTNAF ASMQQQHGGM GPSIEEMMPA 300 HQVDIPAVTT ETQADREVSD YETR* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1tqe_P | 4e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 4e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
1tqe_R | 4e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
1tqe_S | 4e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6byy_A | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6byy_B | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6byy_C | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6byy_D | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6bz1_A | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6bz1_B | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6bz1_C | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6bz1_D | 5e-17 | 1 | 54 | 1 | 54 | MEF2 CHIMERA |
6c9l_A | 4e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_B | 4e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_C | 4e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_D | 4e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_E | 4e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
6c9l_F | 4e-17 | 1 | 54 | 1 | 54 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.12659s0064.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ056457 | 0.0 | DQ056457.1 Arabidopsis thaliana MADS-box family protein (At1g22130) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010498675.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL104 | ||||
Swissprot | Q9LM46 | 0.0 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | D7KL04 | 0.0 | D7KL04_ARALL; Predicted protein | ||||
STRING | Bostr.12659s0064.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G22130.1 | 0.0 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.12659s0064.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|