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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Bostr.0556s0185.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family |
MIKC_MADS |
Protein Properties |
Length: 265aa MW: 30154.9 Da PI: 8.9686 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Bostr.0556s0185.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 96.6 | 1e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+nrqvtf+kRrng+lKKA+ELSvLCdae+a++ifs++gklye++s
Bostr.0556s0185.1.p 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEIALLIFSNRGKLYEFCS 59
79***********************************************96 PP
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2 | K-box | 86.7 | 4.6e-29 | 82 | 174 | 8 | 100 |
K-box 8 sleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97
++++++ + +q++ kLk+++e Lq++qRhllGe+L ++ ++eL+qLe+q++ sl++iRs+K + +l+q+++l+ ke++l e+n++Lr+k
Bostr.0556s0185.1.p 82 NQSAKDLQDKYQDYLKLKSRVEVLQHSQRHLLGEELAEMGVNELEQLERQVDASLRQIRSTKARSMLDQLSDLKTKEEMLLETNRDLRRK 171
36788999********************************************************************************** PP
K-box 98 lee 100
lee
Bostr.0556s0185.1.p 172 LEE 174
987 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.0E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 33.137 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.96E-43 | 2 | 77 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-32 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.5E-32 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.3E-24 | 86 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.603 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0010076 | Biological Process | maintenance of floral meristem identity |
GO:0048440 | Biological Process | carpel development |
GO:0048441 | Biological Process | petal development |
GO:0048442 | Biological Process | sepal development |
GO:0048443 | Biological Process | stamen development |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MGRGKVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEIALLIFSN RGKLYEFCSS 60 PSGMAKTIEK YRKHSYATMD PNQSAKDLQD KYQDYLKLKS RVEVLQHSQR HLLGEELAEM 120 GVNELEQLER QVDASLRQIR STKARSMLDQ LSDLKTKEEM LLETNRDLRR KLEESDAALT 180 QSLWGASAAE HSQEQQQQQQ QQHQGMSSYQ SNPPIQEAGF FKSLQGNVAL QMSHYNQNHA 240 AETNASNSAT ISQNVNGFFP GWMV*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
4ox0_A | 8e-23 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_B | 8e-23 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_C | 8e-23 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
4ox0_D | 8e-23 | 93 | 172 | 22 | 101 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that binds specifically to the CArG box DNA sequence 5'-CC (A/T)6 GG-3' (PubMed:7632923, PubMed:25183521). Plays an important role in the determination of flower meristem identity. Involved in the specification of sepal identity. Contributes to the development of petals, stamens and carpels (PubMed:15530395). {ECO:0000269|PubMed:15530395, ECO:0000269|PubMed:25183521, ECO:0000269|PubMed:7632923}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY063894 | 0.0 | AY063894.1 Arabidopsis thaliana putative MADS-box protein AGL3 (At2g03710) mRNA, complete cds. |
GenBank | AY096386 | 0.0 | AY096386.1 Arabidopsis thaliana putative MADS-box protein (AGL3) (At2g03710) mRNA, complete cds. |