PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bathy08g04640
Organism
Bathycoccus prasinos
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Bathycoccus
Family ERF
Protein Properties Length: 587aa    MW: 61276.4 Da    PI: 10.1391
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bathy08g04640genomeORCAEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.42.3e-15991401155
            AP2  11 krgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    ++++W+AeIrdp   + r +r +lg+f+taeeAa+a++aa++ ++g
  Bathy08g04640  99 TTNSWAAEIRDP---N-RgARLWLGTFDTAEEAARAYDAAARHIRG 140
                    589********8...3.35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.73E-1138148No hitNo description
PROSITE profilePS5103218.80839148IPR001471AP2/ERF domain
PRINTSPR003671.0E-104051IPR001471AP2/ERF domain
SMARTSM003802.2E-2295154IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.0E-2497148IPR001471AP2/ERF domain
SuperFamilySSF541712.68E-1699148IPR016177DNA-binding domain
PfamPF008471.1E-899140IPR001471AP2/ERF domain
PRINTSPR003671.0E-10114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MNEDENPKED PSSLDGGGGT TAQQGGSTKT KTKKQCSSVY RGVRQRPWGR YEKKNFLFFP  60
LFLLDIFLFF EGAKFLLPNS PQKYSFFLLN NDALINKQTT NSWAAEIRDP NRGARLWLGT  120
FDTAEEAARA YDAAARHIRG PGARTNFQLA PGEEPAPFVL PDPPAGRGGG GGVSGGGGRG  180
GAGRSGGGSG RGPHASKKNK SKDDGKGDEK NGFHGSEPSK FPSAAGLSSF TSLGLPTRGF  240
NGLTPENDLS ALVNANLALA QQNLEMSGRH TGSPDYNGIR LSSGYSPTIA GSSSLPGGRL  300
GSLPSPSELL AGSHLKYSSH QSNLGNNRES NGGDNDGKNN NSKDNSNMPA MYGNAGGKRD  360
RGPSSAFFGT SFGVAGSFGS IFPHDMLGTS PSDRSGNKNS TKVDYYDDLN AGTSPSSRGN  420
STHKGDRYNN NGNNSGGGRG RGFGRGSGGR GGDRNNQTDD ENMQNGGNAF KVGSIGYMRD  480
LDDALPLVGS LELGSPDLGN YVEIGRSNDT KNNTNNNSKA SLRGTKSKSN ASPTKKSGGS  540
SGRSSGNSNE ETKSGGRSTR GTTRSSQDPG SDTFDALSAL IDQKRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166178RGGGGGVSGGGGR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822710.0FO082271.1 Bathycoccus prasinos genomic : Chromosome_8.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007511516.10.0predicted protein
TrEMBLK8EHK10.0K8EHK1_9CHLO; Uncharacterized protein
STRINGXP_007511516.10.0(Bathycoccus prasinos)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP1321540
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.12e-10cytokinin response factor 4