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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
BGIOSGA035980-PA |
| Common Name | OsI_38778 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family |
LFY |
| Protein Properties |
Length: 162aa MW: 17541.2 Da PI: 4.6819 |
| Description |
LFY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA035980-PA | genome | RIS | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FLO_LFY | 128.5 | 8.7e-40 | 1 | 139 | 1 | 154 |
FLO_LFY 1 mdpea.fsas.lfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmk 91
mdp++ fsa+ f+wd + +pa + + + a+ releel+ +yGvr++tva+i+elGft+stL+ m+++eldd+m+
BGIOSGA035980-PA 1 MDPNDaFSAAhPFRWDLGPP---APAPVPPPP--P-------PPPLANVPRELEELVAGYGVRMSTVARISELGFTASTLLAMTERELDDMMA 81
67655476654899995322...222221111..1.......233455679****************************************** PP
FLO_LFY 92 slseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepv 154
+l+ +fr+dll+Ger+G++aa+raer rl++ +++ +++ +++d +sqe++ ++
BGIOSGA035980-PA 82 ALAGLFRWDLLLGERFGLRAALRAERGRLMSLG--GRHH---GHQSGSTVDGASQEAIDKNML 139
******************************965..5555...67888899******9988765 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 162 aa
Download sequence Send
to blast |
MDPNDAFSAA HPFRWDLGPP APAPVPPPPP PPPLANVPRE LEELVAGYGV RMSTVARISE 60
LGFTASTLLA MTERELDDMM AALAGLFRWD LLLGERFGLR AALRAERGRL MSLGGRHHGH 120
QSGSTVDGAS QEAIDKNMLG DLDGLLEEDK MRMVMAAMVD QL
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: In the vegetative phase, expressed in shoot meristems and leaf primordia. In the reproductive phase, present in the meristems of primary and secondary branches at primordial and elongating stages, but later transiently down-regulated from the meristems, when the meristem identity change from inflorescence to spikelet. Subsequent expression recovery when spikelets are differentiated, with an accumulation in floral meristems and in primordia of all floral organs, including lodicules, stamens, carpels and ovules. {ECO:0000269|PubMed:21910771}. |
| Uniprot | TISSUE SPECIFICITY: In very young panicle but not in mature florets, mature leaves, roots or apical meristems. {ECO:0000269|PubMed:9482818}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Together with APO1, involved in the temporal regulation of meristem size and identity during both vegetative and reproductive developments through interaction with APO1 (PubMed:21910771). Promotes flowering (PubMed:21910771). {ECO:0000250|UniProtKB:Q00958, ECO:0000269|PubMed:21910771}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G61850.1 | 5e-13 | floral meristem identity control protein LEAFY (LFY) |
