PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA033976-PA
Common NameOsI_36141
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 327aa    MW: 35013.2 Da    PI: 10.3335
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA033976-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.67.9e-12163207554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h   Er+RR+++N++f  Lr++lP+a     +K +Ka++L +A +Y++ L
  BGIOSGA033976-PA 163 HVLSERKRREKLNDSFKALRDVLPPA-----TKKDKASVLMRAKDYVNVL 207
                       7789*********************9.....9**************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.262158207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.23E-10160208No hitNo description
SuperFamilySSF474593.53E-16160226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-15162225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-9163207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-12164213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEEHDHQYAT PPSPSSSSFR SFSAGTTTTT SRDDNSSLML AAATAAASCH HQTEVSSQIL  60
LPRPGQAARR SSGGHGAATA FRPYSRYLGP KKHLLRRPGA ATTTTTGGGG GQRAFKKAIS  120
VLSKIHAARL AQYYQIMEMA ARASPAATGG GGGGENQPLQ LQHVLSERKR REKLNDSFKA  180
LRDVLPPATK KDKASVLMRA KDYVNVLKGR IAELEEKNRK LSESQQLHAG DGDGGERDDR  240
PDDDKIEVNM SRSPADHDSK CQELHLKIVL GSSSGCSAMD AVAGILQGLN EKRDVSLLAT  300
GHNSSSSGRR RLLPRAKSSQ QPAVIVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1166171ERKRRE
2167172RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.552120.0panicle| root
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1154625580.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076750.0AK107675.1 Oryza sativa Japonica Group cDNA clone:002-132-A01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638951.11e-150transcription factor PIF1
TrEMBLB8BKJ90.0B8BKJ9_ORYSI; Uncharacterized protein
STRINGONIVA05G07120.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-18bHLH family protein