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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
BGIOSGA026745-PA |
| Common Name | OsI_29723 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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| Family |
M-type_MADS |
| Protein Properties |
Length: 337aa MW: 36193.5 Da PI: 4.436 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| BGIOSGA026745-PA | genome | RIS | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 88.4 | 3.9e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtfskRrng++KKA+ELSvLCd++va+++fs++g+l +s
BGIOSGA026745-PA 9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDVALLMFSPSGRLSHFS 58
79********************************************9997 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 337 aa
Download sequence Send
to blast |
MGRVKLPIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDVALLMFSP SGRLSHFSGR 60
RGVEDVILRY MNLSEHDRGE AIQNREEIQQ EIYSSQQQLQ ITEDRLRMFE PDPAAFGTSS 120
EVDGCEKYLM ELLTRVVERK NNLLSSHMAP FDATTAAMQG ADGTQMYVSQ ADGLATFGGD 180
AAMWGPDGGA DPGHPMFSAS DPLIYLRDHD VYDANSQVAG LHGGDPCAAG GAAAAAAAVG 240
CVDDDVAGGH AAAADAWRQA YTCTELLSTL IPTTPFPLMP HCLGPEDQYL SMEHGMVAAA 300
QEPVEASTAS CSYVPSDENS GTPVMAYDSN PPPANIA
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1tqe_P | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6byy_A | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6byy_B | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6byy_C | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6byy_D | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_A | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_B | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_C | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6bz1_D | 1e-17 | 1 | 75 | 1 | 74 | MEF2 CHIMERA |
| 6c9l_A | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-17 | 1 | 75 | 1 | 74 | Myocyte-specific enhancer factor 2B |
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