PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA023114-PA
Common NameOsI_23433
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 563aa    MW: 58862.9 Da    PI: 8.3164
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA023114-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH49.29.4e-16341387554
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
               HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                       h + ErrRR+riN++f++Lr llP +   p+ K +Ka+iL  ++eY+ +L
  BGIOSGA023114-PA 341 HMISERRRRERINDSFQTLRALLPLP---PDSKKDKAAILASTTEYMDKL 387
                       8899**********************...*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.094336387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-18337407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-17340406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-13341387IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-14342393IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.20E-7351387No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 563 aa     Download sequence    Send to blast
MDAIFALPPD ARARAMGRAA ARLPGCLYLC LWAPAAAIAG GVQPNHLFCL DAWIGGGGGV  60
GAGGGGGDRA LELFEAYRGA LCAAVSGCVP GWAYKEGAAC MELTEHDLAA SASLQVQQQF  120
YHETGTKMAV FMGCDSGEIE VGLSAASATA TAAVVGEMQQ SILEELLQMP PPPPSPSSSS  180
LLSLSVGSPE YSSLVRSMAT SVGASAAADP SPVHGGLLAP VYGEFPGSDD DAAMAQAMLA  240
VISTPAPPPP LWRPPRRRAR SSSSPRRATA FKAYNAALSP RARPRPGAPG QRMIKTGISL  300
LASVHMQTRS RELAAARQRD THAAPPPPPP PPPPSSSQLH HMISERRRRE RINDSFQTLR  360
ALLPLPPDSK KDKAAILAST TEYMDKLISQ VSELGEKNRQ LEAQLAARSG EAQWPAASGG  420
GGGESSSERV QVDVVIAGSS ASTDQPREVS IRVTVRAECD VSELVVAVLA RLREMGRFAV  480
VSVDAGRRSS SFAQASLTFR VMNYKYKTNS VTVGKSQLIV HTEKYKAGDV CDETSLKEAV  540
AKAVDGAVTA PPPPVAPPPP TSP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1254260PRRRARS
2344349ERRRRE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.919580.0flower| leaf| panicle
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0054600.0AP005460.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0610D01.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882299.10.0putative transcription factor bHLH041
TrEMBLB8B3U20.0B8B3U2_ORYSI; Uncharacterized protein
TrEMBLC7J3C10.0C7J3C1_ORYSJ; Os06g0570950 protein
STRINGONIVA06G22830.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39773367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.13e-20bHLH family protein