PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014881-PA
Common NameOsI_16316
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 390aa    MW: 43317.7 Da    PI: 5.7474
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014881-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.81.4e-29872282128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra......... 77 
                       p G++F+P+d e++ e+L++k++  +      ++ +   +++v +i++++P++Lp  +k + ++ +fF++ +++y +g+rk+r+         
  BGIOSGA014881-PA  87 PDGVKFDPSDLEVL-EHLERKINLGNpgpqglIDHFIPtLEKVeGICYTHPENLP-GIKLDGTSSHFFHRISNAYGSGQRKRRKishtghaas 177
                       88**********99.99****998887887774444444888878**********.66778899*******************7677666655 PP

               NAM  78 tksgyWkatgkdkevlskkgelvglkktLvfykg.rapkgektdWvmheyrl 128
                        ++ +W++tgk+k++++ +g l+g kk+Lv+ykg +++k ++++Wvmh+y+l
  BGIOSGA014881-PA 178 DENIRWHKTGKSKQIYH-NGVLKGWKKILVLYKGsKKNKIVQANWVMHQYNL 228
                       44678************.99************996777889*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.28E-3470247IPR003441NAC domain
PROSITE profilePS5100528.47386247IPR003441NAC domain
PfamPF023653.7E-1287228IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MARLVTVAAA KVKGSASRFR YVCSTPRTLD QPWIIAGGKV IATKIRNATQ LLSCKLGELV  60
PEAWRECPNC KCHIDNSDVT LQWPEFPDGV KFDPSDLEVL EHLERKINLG NPGPQGLIDH  120
FIPTLEKVEG ICYTHPENLP GIKLDGTSSH FFHRISNAYG SGQRKRRKIS HTGHAASDEN  180
IRWHKTGKSK QIYHNGVLKG WKKILVLYKG SKKNKIVQAN WVMHQYNLGV EEGGEDGELV  240
VSKVFYQLSS KQTGTPEMDS VTEEASDALT IRSDPITPIT NPPLPRCLMN SPCDTEQNGT  300
ISHDQEGECS TSTLRPMVEA GNRAGCSAGA STAGDFNEDL LQRCEFPEDP VPTLDDTLPF  360
LYTDETDLFS WEDFQFGSQE SFGWVDGDHT
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329932910.0
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6303300.0AB630330.1 Oryza sativa Japonica Group BET1 mRNA for transcription factor, complete cds, cultivar: Wataribune.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006653523.10.0PREDICTED: NAC domain-containing protein 8-like
TrEMBLA0A0E0H2510.0A0A0E0H251_ORYNI; Uncharacterized protein
TrEMBLB8AVG70.0B8AVG7_ORYSI; Uncharacterized protein
STRINGONIVA04G14230.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21103799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.17e-62NAC family protein