PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

HD-ZIP

Protein Properties

Length: 247aa MW: 27305.1 Da PI: 8.9349

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
BGIOSGA014600-PA	genome	RIS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.8	2.1e-19	81	135	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++k+q +Le+ F+++++++ ++++ LA++lgL rqV vWFqNrRa+ k BGIOSGA014600-PA 81 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTK 135 788899***********************************************98 PP
2	HD-ZIP_I/II	129	2e-41	81	170	1	91
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +kk+rlsk+q+++LE+sF+e+ +L+p++K++la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l BGIOSGA014600-PA 81 RKKLRLSKDQSAVLEDSFREHPTLNPRQKATLAQQLGLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQKEVQELR-AL 170 69*************************************************************************************9.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.3E-19	66	131	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.94E-19	72	138	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.346	77	137	IPR001356	Homeobox domain
SMART	SM00389	8.3E-18	79	141	IPR001356	Homeobox domain
Pfam	PF00046	8.8E-17	81	135	IPR001356	Homeobox domain
CDD	cd00086	5.09E-16	81	138	No hit	No description
PRINTS	PR00031	4.9E-6	108	117	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	112	135	IPR017970	Homeobox, conserved site
PRINTS	PR00031	4.9E-6	117	133	IPR000047	Helix-turn-helix motif
SMART	SM00340	2.7E-24	137	181	IPR003106	Leucine zipper, homeobox-associated
Pfam	PF02183	2.3E-11	137	171	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MMERAEDLRL SLSLSSPLIA PRTHHVAMLF HAPPEKRFLE MPLLPAAKRS EVVAAEEERA 60 GLRGGGGSDE EDGGCGIDGS RKKLRLSKDQ SAVLEDSFRE HPTLNPRQKA TLAQQLGLRP 120 RQVEVWFQNR RARTKLKQTE VDCEFLKRCC ETLTEENRRL QKEVQELRAL KLVSPHLYMN 180 MSPPTTLTMC PSCERVSNTN NNSSAAAAAD RRGIRTTTAA AGGSVVDTAA DGGILCHRPI 240 AVRPQQS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	85	SRKKLRL
2	129	137	RRARTKLKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.23861	0.0	callus\| panicle

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	37991629	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK122006	0.0	AK122006.1 Oryza sativa Japonica Group cDNA clone:J033110O17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015634538.1	0.0	homeobox-leucine zipper protein HOX17
Swissprot	Q01I23	0.0	HOX17_ORYSI; Homeobox-leucine zipper protein HOX17
TrEMBL	A0A0D3FYM6	0.0	A0A0D3FYM6_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9ZNV6	0.0	A0A0D9ZNV6_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0H3W1	0.0	A0A0E0H3W1_ORYNI; Uncharacterized protein
TrEMBL	I1PNL2	0.0	I1PNL2_ORYGL; Uncharacterized protein
STRING	OGLUM04G20690.1	0.0	(Oryza glumipatula)
STRING	ONIVA04G19000.1	0.0	(Oryza nivara)
STRING	ORGLA04G0178100.1	0.0	(Oryza glaberrima)
STRING	OBART04G20760.1	0.0	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2587	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44910.1	3e-65	homeobox-leucine zipper protein 4

Publications ? help Back to Top
Agalou A, et al. A genome-wide survey of HD-Zip genes in rice and analysis of drought-responsive family members. Plant Mol. Biol., 2008. 66(1-2): p. 87-103 [PMID:17999151]