PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA014125-PA
Common NameOsI_17867
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family Trihelix
Protein Properties Length: 390aa    MW: 41492.2 Da    PI: 9.2328
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA014125-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix48.32.7e-1567152271
          trihelix   2 WtkqevlaLiearremeerlrr.gk...............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                       Wt +e l Li+a r +++r    g                +++++W++v +++++ g+ rs++qC++kw+nl ++ykk+++ e++ 
  BGIOSGA014125-PA  67 WTLHERLILITANRLDDDRRAGvGGaaaggggagspptprSAEQRWKWVENYCWKNGCLRSQNQCNDKWDNLLRDYKKVRDYESRV 152
                       ************9966555553122345666667777777*****************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.57459139IPR017877Myb-like domain
PfamPF138371.9E-967150No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MSGSSADPSP SASTAGAAVS PLALLRAHGH GHGHLTATPP SGATGPAPPP PSPASGSAPR  60
DYRKGNWTLH ERLILITANR LDDDRRAGVG GAAAGGGGAG SPPTPRSAEQ RWKWVENYCW  120
KNGCLRSQNQ CNDKWDNLLR DYKKVRDYES RVAAAAATGG AAAANSAPLP SYWTMERHER  180
KDCNLPTNLA PEVYDALSEV LSRRAARRGG ATIAPTPPPP PLALPLPPPP PPSPPKPLVA  240
QQQHHHHGHH HHPPPPQPPP SSLQLPPAVV APPPASVSAE EEMSGSSESG EEEEGSGGEP  300
EAKRRRLSRL GSSVVRSATV VARTLVACEE KRERRHRELL QLEERRLRLE EERTEVRRQG  360
FAGLIAAVNS LSSAIHALVS DHRSGDSSGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1302306KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3833740.0DQ383374.1 Oryza sativa (indica cultivar-group) cultivar CL 16 shattering protein (sh4) mRNA, complete cds.
GenBankEF2032440.0EF203244.1 Oryza sativa (indica cultivar-group) shattering 1 (SHA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635337.10.0trihelix transcription factor ASR3
TrEMBLA2XYT70.0A2XYT7_ORYSI; Uncharacterized protein
STRINGOS04T0670900-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.12e-40Trihelix family protein