PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA012597-PA | ||||||||
Common Name | OsI_11505 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 26170.4 Da PI: 6.5475 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.1 | 5e-19 | 66 | 115 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp + +r++lg+f tae Aa+a+++a+++++g BGIOSGA012597-PA 66 LYRGIRRRP-WGKWAAEIRDPAK---GARVWLGTFATAEAAARAYDRAARRIRG 115 69*******.**********843...4*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.91E-16 | 65 | 124 | No hit | No description |
Pfam | PF00847 | 9.7E-13 | 66 | 115 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.36E-22 | 66 | 124 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.9E-37 | 66 | 129 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.46 | 66 | 123 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.3E-31 | 67 | 124 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 67 | 78 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-11 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MCGGAIPLIS SRGPGGKRSL SAADELWPPP PQHASDDPAE QAAADEEEQE QQPAARRQRR 60 GERRTLYRGI RRRPWGKWAA EIRDPAKGAR VWLGTFATAE AAARAYDRAA RRIRGTKAKV 120 NFPNEDNAFA AAPPPYHLAA YYGDASSTSY LYPMAMTPAA AGLREQQLMT TTAVEYSVND 180 AVDVASVYFQ PPPPAVAYEF SAVGGGAVVV PVSAVAPAMT YGQSQEVAAP LMWNFDDITA 240 MPM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-22 | 67 | 128 | 6 | 68 | ATERF1 |
3gcc_A | 1e-22 | 67 | 128 | 6 | 68 | ATERF1 |
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Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 58 | 73 | RRGERRTLYRGIRRRP |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32996623 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Mostly expressed in stems and leaves, and, to a lower extent, in roots, siliques and flowers. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9192694}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:9159183}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By 1-aminocyclopropane-1-carboxylic acid (ACC, ethylene precursor), methyl jasmonate (MeJA), and Botrytis cinerea. Also induced by cadmium. {ECO:0000269|PubMed:18836139, ECO:0000269|PubMed:9159183}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111414 | 0.0 | AK111414.1 Oryza sativa Japonica Group cDNA clone:002-182-G01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015629983.1 | 1e-175 | ethylene-responsive transcription factor RAP2-3 | ||||
Swissprot | P42736 | 3e-34 | RAP23_ARATH; Ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A0E0NUU6 | 1e-174 | A0A0E0NUU6_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2XGJ2 | 1e-174 | A2XGJ2_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1PB65 | 1e-174 | I1PB65_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q10LN8 | 1e-174 | Q10LN8_ORYSJ; AP2 domain containing protein, expressed | ||||
STRING | ORUFI03G17430.1 | 1e-175 | (Oryza rufipogon) | ||||
STRING | OS03T0341000-01 | 1e-175 | (Oryza sativa) | ||||
STRING | ORGLA03G0161100.1 | 1e-175 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16919 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 9e-21 | ethylene-responsive element binding protein |