PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | BGIOSGA003134-PA | ||||||||
Common Name | OsI_01154 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 590aa MW: 60660.5 Da PI: 7.2931 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.1 | 1.2e-30 | 311 | 369 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+ BGIOSGA003134-PA 311 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRSILITTYEGTHNHP 369 7***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.5E-34 | 295 | 371 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-28 | 303 | 371 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.505 | 305 | 371 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.1E-37 | 310 | 370 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.7E-27 | 312 | 369 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0080169 | Biological Process | cellular response to boron-containing substance deprivation | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 590 aa Download sequence Send to blast |
MDKGHLGGGG GGGGGLLALD ASPRPLGFLN LLSPPPFHRS TMEADDSGGG GGRARRSVEV 60 DFFSDEKKNM KKSRVSGGAA AEADDGKGPA AAGLAIKKED LTINLLPAGN NARSDRSMVV 120 DDDAASRPDH EEKSRSSNEL AAMQAELGRM NEENQRLRGM LTQVTTSYQA LQMHLVALMQ 180 QRPQMMQPPT QPEPPPPHQD GKAEGAVVPR QFLDLGPSSG AGGEAAEEPS NSSTEAGSPR 240 RSSSTGNKDQ ERGDSPDAPS TAAAWLPGRA MAPQMGAAGA AGKSHDQQAQ DANMRKARVS 300 VRARSEAPII ADGCQWRKYG QKMAKGNPCP RAYYRCTMAT GCPVRKQVQR CAEDRSILIT 360 TYEGTHNHPL PPAAMAMAST TSAAASMLLS GSMPSADGAA GLMSSNFLAR TVLPCSSSMA 420 TISASAPFPT VTLDLTHAPP GAPNAVPLNA ARPGAPAPQF QVPLPGGGMA PAFAVPPQVL 480 YNQSKFSGLQ MSSDSAEAAA AAAQFAQPRP PIGQLPGPLS DTVSAAAAAI TADPNFTVAL 540 AAAITSIIGG QHAAAAGNSN ANNTNTNTTS NTNNTSSNNT TSNNTNSETQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 2e-22 | 297 | 373 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.6144 | 0.0 | callus| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 50843961 | 0.0 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots, leaves, shoots, flowers and siliques. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269|PubMed:12000796, ECO:0000269|PubMed:25733771}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00209 | DAP | Transfer from AT1G62300 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY676928 | 0.0 | AY676928.1 Oryza sativa (indica cultivar-group) transcription factor OsWRKY99 (OsWRKY99) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622142.1 | 0.0 | probable WRKY transcription factor 31 isoform X2 | ||||
Swissprot | Q9C519 | 1e-127 | WRKY6_ARATH; WRKY transcription factor 6 | ||||
TrEMBL | B8ABQ8 | 0.0 | B8ABQ8_ORYSI; Uncharacterized protein | ||||
STRING | ONIVA01G11830.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5265 | 36 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G62300.1 | 1e-101 | WRKY family protein |