PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID BGIOSGA002940-PA
Common NameOsI_00757
Organism
Oryza sativa subsp. indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 339aa    MW: 36205.9 Da    PI: 9.5333
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
BGIOSGA002940-PAgenomeRISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12235281455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h + Er+RR+++N++f  L+ +lP+       K +K +iL +A eY+ksL+
  BGIOSGA002940-PA 235 QHTMSERKRREKLNDSFVALKAVLPPG-----SKKDKTSILIRAREYVKSLE 281
                       599**********************95.....4999**************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.55E-13229285No hitNo description
SuperFamilySSF474591.02E-16229298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.665231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-13234279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-10235281IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.5E-13237286IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:1.20.5.1706.5E-5280300No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MAPPPPAPAT TASPVAMLPA VTYMVIAAVL GSLSKGSSSS SARRFSTISM HLSMDDDDDQ  60
SAVYGAAMVD DLLTPSPSTH HAVAAAAAGS FPSSSSSSAS FRSASVSYSP DTSSSAAAAA  120
ATGFYPELSS QVAPLLPPLP LVRNEPQPGR YTAGLPPPPP PPVTGGAFRR YARHLGPRRA  180
PKPGACGQRM FKTAMSALAK MHMETTYRRR QYYYQQAAAA AEAAPPPPSG NNQLQHTMSE  240
RKRREKLNDS FVALKAVLPP GSKKDKTSIL IRAREYVKSL ESKLSELEEK NRELKARLST  300
RPDDTKNDEE EVAAPPEAGG EVKREDPVEI EALDNFFIR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1239244ERKRRE
2240245RKRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.884950.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126090.0CP012609.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025880866.11e-150putative transcription factor bHLH041
TrEMBLB8ADQ60.0B8ADQ6_ORYSI; Uncharacterized protein
STRINGONIVA01G07080.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29003182
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56960.12e-17bHLH family protein