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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.N6IZA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ERF | ||||||||
Protein Properties | Length: 257aa MW: 28494.9 Da PI: 9.7365 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.4 | 1.1e-20 | 118 | 168 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp+++g r++lg+f+ta +Aaka+++a+ kl+g Araip.N6IZA 118 HYRGVRQRP-WGKYAAEIRDPNKRG--SRVWLGTFDTAIDAAKAYDRAAFKLRG 168 8********.**********96655..*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 8.70E-31 | 117 | 176 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 9.6E-33 | 117 | 177 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-14 | 118 | 168 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-23 | 118 | 177 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.4E-38 | 118 | 182 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.052 | 118 | 176 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-14 | 119 | 130 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-14 | 158 | 178 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MANPAELSAL NQIKIHLLGE LSPLPHNSSF SFQFYQTNPA TSSSSSSSSS SSASVNQYFN 60 CNEVVNNLET PRSKPHSSAS SSNRKPSLQI SLPKKTEWIQ FGEEKEISKS SEQQKKKHYR 120 GVRQRPWGKY AAEIRDPNKR GSRVWLGTFD TAIDAAKAYD RAAFKLRGSK AILNFPLEAG 180 ADDRKRPRQE EEVEEKPVVK KEKTEESSDV SGVRDIPLTP SSWTGFWDAD VTGIFSVPPL 240 SPLSPLPALG FPQLMVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-30 | 115 | 183 | 2 | 70 | ATERF1 |
3gcc_A | 1e-30 | 115 | 183 | 2 | 70 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:9756931}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00549 | DAP | Transfer from AT5G47230 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.N6IZA |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2). Wounding as well as cold stress induction does not require EIN2. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by jasmonate, Alternaria brassicicola, exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016201469.2 | 0.0 | ethylene-responsive transcription factor 5 | ||||
Swissprot | O80341 | 7e-69 | EF102_ARATH; Ethylene-responsive transcription factor 5 | ||||
TrEMBL | A0A444WUK7 | 1e-139 | A0A444WUK7_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA11G03900.1 | 2e-93 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1085 | 34 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47230.1 | 2e-38 | ethylene responsive element binding factor 5 |
Publications ? help Back to Top | |||
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