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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.LJJ47 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | ERF | ||||||||
Protein Properties | Length: 309aa MW: 34672.9 Da PI: 5.4492 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60 | 5.5e-19 | 80 | 128 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a+++ ++k++g Araip.LJJ47 80 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREARKIRG 128 9*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.1E-32 | 79 | 137 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-22 | 79 | 137 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.775 | 79 | 136 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-38 | 79 | 142 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.0E-12 | 80 | 91 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.3E-12 | 80 | 128 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.31E-32 | 80 | 137 | No hit | No description |
PRINTS | PR00367 | 8.0E-12 | 102 | 118 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MCGGAIIAEF IPRNRTRRLT ASEIWPNTFS NNQVDDFDFD FSHHHLKNTP TLNKSSSPSV 60 GEQDQENSKP PAKRQRKNLY RGIRQRPWGK WAAEIRDPRK GVRVWLGTFN TAEEAARAYD 120 REARKIRGKK AKVNFPNEDD EYSIQQSRNI IPNIPPPIRR SSNHPPLYQY GDANNNSNNN 180 MNNQARTLNL NLEFGYDLNH GGAVGVGDAI NADPFVSCVD QNSEYGSGSG SASEVAGGSS 240 GDQQHQEEKK SYEVEKLSEE LMAYENYMGF YDQMPFYDAQ SAVAAVAAAN NNNNVVQESV 300 VGELWTFDE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-22 | 80 | 136 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
5wx9_A | 2e-21 | 80 | 138 | 15 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.LJJ47 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ048931 | 0.0 | JQ048931.1 Arachis hypogaea ethylene-responsive element binding factor 4 (ERF4) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016205223.1 | 0.0 | ethylene-responsive transcription factor RAP2-3 | ||||
Refseq | XP_020959545.1 | 0.0 | ethylene-responsive transcription factor RAP2-3 | ||||
Refseq | XP_020959546.1 | 0.0 | ethylene-responsive transcription factor RAP2-3 | ||||
Refseq | XP_025660800.1 | 0.0 | ethylene-responsive transcription factor RAP2-3 | ||||
TrEMBL | A0A444YIM4 | 0.0 | A0A444YIM4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA02G01960.1 | 1e-108 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6771 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G16770.1 | 6e-35 | ethylene-responsive element binding protein |