![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Araip.HD5TK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 406aa MW: 45948.1 Da PI: 6.9171 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 80.1 | 2.6e-25 | 197 | 251 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 kpr Wt+e H+ Fv+av qL G++kA+P++ilelm+++ Lt+e+v+SHLQkYR++ Araip.HD5TK 197 KPRFIWTQERHQMFVDAVLQL-GIDKAVPRKILELMDIPNLTRENVASHLQKYRMH 251 79*******************.********************************96 PP | |||||||
2 | Response_reg | 51.1 | 7.5e-18 | 35 | 148 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.S.EHHHHHHHHHHHTTTSEEEEEESTTT..HHHHHHHH. CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.m.dGlellkeireeepklpiivvtahge..eedaleal. 90 +l+vd +p ++l++ ++ + +y +v+++ +g+ al+ll+e+ +D++l+D+ mpg m dG++ll + +e ++p++++ a+++ + + e + Araip.HD5TK 35 LLVVDHDPEHLRLIQDMAFQCNY-QVTTCFEGSHALNLLRESSgcFDVVLCDVHMPGiMdDGSRLLDHVLQEF-NIPVVMMCATDDesSIAVMEGMk 129 599********************.*********************************636*********8888.89999998777733446778999 PP HTTESEEEESS--HHHHHH CS Response_reg 91 kaGakdflsKpfdpeelvk 109 k Ga l+Kp ++++l++ Araip.HD5TK 130 KKGACYNLVKPLSEQDLMN 148 9***************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF52172 | 5.55E-22 | 33 | 157 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 9.7E-25 | 33 | 183 | No hit | No description |
SMART | SM00448 | 3.7E-11 | 33 | 150 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 28.43 | 34 | 154 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.2E-13 | 36 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 6.03E-16 | 36 | 154 | No hit | No description |
SuperFamily | SSF46689 | 1.97E-19 | 195 | 254 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 6.2E-27 | 195 | 254 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.6E-23 | 197 | 251 | IPR006447 | Myb domain, plants |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 406 aa Download sequence Send to blast |
MAANNNPHSL ADQNANSMPP PILDHQFSTT TAPRLLVVDH DPEHLRLIQD MAFQCNYQVT 60 TCFEGSHALN LLRESSGCFD VVLCDVHMPG IMDDGSRLLD HVLQEFNIPV VMMCATDDES 120 SIAVMEGMKK KGACYNLVKP LSEQDLMNIW QNVMEKTQKE VFYDDDDESK GTVNRRKRSL 180 STERDDHDVQ SNTPNKKPRF IWTQERHQMF VDAVLQLGID KAVPRKILEL MDIPNLTREN 240 VASHLQKYRM HLKKKSQETK QTNSNGKINV NREANKQLCA PLRVQASTNI PQITQTLPVH 300 HQYYSSLLSV PKQDPIIMSS KCDHHFHHQS QPIVSTAPHA LMKFCNSNSN PFGLINKNDI 360 VGSNMALNHQ NNNDYGCYII QQSNYNYGMM ASQPCDGAAF QGGMRG |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 3e-19 | 193 | 256 | 1 | 64 | ARR10-B |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Araip.HD5TK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016193006.1 | 0.0 | two-component response regulator ARR14-like | ||||
Refseq | XP_025640897.1 | 0.0 | two-component response regulator ARR14-like | ||||
TrEMBL | A0A445DNK5 | 0.0 | A0A445DNK5_ARAHY; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20954 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16110.1 | 6e-54 | response regulator 2 |