PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.F5JIT

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

WOX

Protein Properties

Length: 322aa MW: 36461.3 Da PI: 8.1324

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.F5JIT	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.2	2.1e-21	83	142	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+ ql +Leel+++ +++psae+++++A++l +++ ++V++WFqN++a+e++ Araip.F5JIT 83 TRWSPTPIQLLVLEELYRQgTKTPSAEQIQQIASQLrrfgKIEGKNVFYWFQNHKARERQ 142 7***************99************************************97 PP
2	Wus_type_Homeobox	110	1.3e-35	81	144	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 + tRW+Ptp Q+ +Leely++G++tP++e+iq+i+++L+++Gkie+kNVfyWFQN+kaRerqk+ Araip.F5JIT 81 QGTRWSPTPIQLLVLEELYRQGTKTPSAEQIQQIASQLRRFGKIEGKNVFYWFQNHKARERQKR 144 579***********************************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.41E-13	78	145	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.872	78	143	IPR001356	Homeobox domain
SMART	SM00389	1.2E-6	80	147	IPR001356	Homeobox domain
CDD	cd00086	3.32E-5	83	138	No hit	No description
Pfam	PF00046	5.5E-19	83	142	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.2E-9	84	142	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MSSHSFSNLF HSSTTTTTPN SSTTTLLDSI VATPKQQLTA CICTHCNHLL TFNPAGHGVE 60 QGTNSNNNNN NVQSHHHQLQ QGTRWSPTPI QLLVLEELYR QGTKTPSAEQ IQQIASQLRR 120 FGKIEGKNVF YWFQNHKARE RQKRRRREME ETTAAASAKG LKETGCEVKE TKKWASTSNC 180 NGGGGHAVQE SMTAVDISEK ESNGWNEFEE RVLRRNRSER QAKYFNIPSI NIAATASVAS 240 QITHNIQLLS THHHPQHHNY NKQDNTSSHP RTLELFPIHK NHDDDDDIIS FSDRKSNKLC 300 ANASMEEALS CDQFFEFLPL RN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.F5JIT

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016195402.1	0.0	WUSCHEL-related homeobox 1
Refseq	XP_025646993.1	0.0	WUSCHEL-related homeobox 1
TrEMBL	A0A444ZJ51	0.0	A0A444ZJ51_ARAHY; Uncharacterized protein
STRING	XP_007157754.1	3e-92	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15154	10	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18010.1	2e-26	WUSCHEL related homeobox 1