PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Araip.E0NQ0 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 494aa MW: 55090.4 Da PI: 4.8689 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 107.2 | 2e-33 | 128 | 267 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd..iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkat 86 lp+G++F+P+d+e++++ L+k ++ + ++++ + evd i++++P++Lp vk++ + ++fF+++ k+y+tg+rk+r+++ + +W++t Araip.E0NQ0 128 LPKGVKFDPSDQEIISHLLAKVGAAGSephpfIDEFIATLEVDdgICYTHPKHLP-GVKQDGSATHFFHRSIKAYNTGNRKRRKINdqdsgDVRWHKT 224 799************777776644444577665554554455345**********.777888999******************85545544778**** PP NAM 87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 gk+k+v+s +g + g+kk++v+y + r k+ekt+Wvmh+y+l Araip.E0NQ0 225 GKTKPVVS-DGVQRGCKKIMVLYmtSVRGVKAEKTNWVMHQYHL 267 ********.99************6656999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-37 | 118 | 286 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.2 | 128 | 286 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-14 | 129 | 267 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 494 aa Download sequence Send to blast |
MAGSSWLVDK SRIATKIKSA SGASGKVLWK SNPTRTCPNC QHVIDNSDVA FTITCSPSPS 60 SHLCFHCCAC VPFIYSSFHD FFDHDSVTLA GATNFIGSVV LWILIFLYEA RDMKIFERAT 120 VAQEWPGLPK GVKFDPSDQE IISHLLAKVG AAGSEPHPFI DEFIATLEVD DGICYTHPKH 180 LPGVKQDGSA THFFHRSIKA YNTGNRKRRK INDQDSGDVR WHKTGKTKPV VSDGVQRGCK 240 KIMVLYMTSV RGVKAEKTNW VMHQYHLGTD EDEKEGEYVI SKVFYQQQVK FGEKDDHDVP 300 GTNEATVVKD DPVTSKSLTS EPPHSEKQCS DLDIGEKTHQ ILQGPQTDCV EDIQVECEEI 360 VKTDVSMADA QNNEGMDNVE NNADGEQKWW DSESQNLLDS QQLVEALALC DDLLHSQCSN 420 KDDENEEHKE HLSLSIYAHL GPEHLKKDLE ECQNLTLDPA NVELETPPSE FRLSQLEFGS 480 QDSFVSFSGG KAVD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Araip.E0NQ0 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016176847.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 | ||||
Refseq | XP_016176848.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-132 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A445BCI9 | 0.0 | A0A445BCI9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA20G32690.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-135 | NAC family protein |