PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.7P1LT
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LFY
Protein Properties Length: 318aa    MW: 37125 Da    PI: 7.7134
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.7P1LTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY141.31.1e-43101191130
      FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifr 98 
                  mdp+af+++lfkwd+r++  + +++l                  ++ + +leelf+ayGvry+t+ak+aelGft+ tLvdmk+eel+++m+sls+ifr
  Araip.7P1LT  10 MDPDAFTSTLFKWDSRTILPTCSSSL------------------MEGTGGLEELFHAYGVRYYTAAKVAELGFTARTLVDMKEEELEHMMNSLSQIFR 89 
                  9*************987662222211..................223579************************************************ PP

      FLO_LFY  99 ldllvGeryGikaavraerrrleeeeaekkrr 130
                  +dllvGeryGikaavraerrr+++++  + r 
  Araip.7P1LT  90 WDLLVGERYGIKAAVRAERRRIQDHH--QLRI 119
                  ***********************965..3333 PP
2FLO_LFY306.19.4e-94144308207386
      FLO_LFY 207 edeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrh 304
                    +++++ +dee++ e++eerqrehPfivtepgevargkknGLDYLf+LyeqCr+fL+q               vtn+vfryakkaga  inkPkmrh
  Araip.7P1LT 144 MRSRSKTMSDEEEEEEEEEERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRDFLIQ---------------VTNEVFRYAKKAGAHCINKPKMRH 226
                  3333444556666777789**************************************98...............69********************** PP

      FLO_LFY 305 YvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                  YvhCYalhcLd+++sn+lrr+fke g nvGawrqacy+plvaiaa + +dida+fn+hprLsiWYvPtkLrqLCh++r++++
  Araip.7P1LT 227 YVHCYALHCLDKDTSNQLRRQFKETGQNVGAWRQACYNPLVAIAALHHHDIDAIFNSHPRLSIWYVPTKLRQLCHAHRNNSA 308
                  ******************************************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016982.6E-12710307IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MYVVLGDRKM DPDAFTSTLF KWDSRTILPT CSSSLMEGTG GLEELFHAYG VRYYTAAKVA  60
ELGFTARTLV DMKEEELEHM MNSLSQIFRW DLLVGERYGI KAAVRAERRR IQDHHQLRID  120
SLPQEGVQQH KEAVGSTWDV RKRMRSRSKT MSDEEEEEEE EEERQREHPF IVTEPGEVAR  180
GKKNGLDYLF HLYEQCRDFL IQVTNEVFRY AKKAGAHCIN KPKMRHYVHC YALHCLDKDT  240
SNQLRRQFKE TGQNVGAWRQ ACYNPLVAIA ALHHHDIDAI FNSHPRLSIW YVPTKLRQLC  300
HAHRNNSAST STHHHLLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A2e-841633064162PROTEIN LEAFY
2vy2_A2e-841633064162PROTEIN LEAFY
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1140146RKRMRSR
2141146KRMRSR
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.7P1LT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ5859884e-42HQ585988.1 Mangifera indica cultivar SiJi LEAFY-like protein (LFY) mRNA, complete cds.
GenBankHQ5859894e-42HQ585989.1 Mangifera indica cultivar SiJi LEAFY-like protein (LFY) gene, complete cds.
GenBankHQ5859904e-42HQ585990.1 Mangifera indica cultivar Kiett LEAFY-like protein (LFY) gene, complete cds.
GenBankHQ5859914e-42HQ585991.1 Mangifera indica cultivar Hong Hua Mango LEAFY-like protein (LFY) gene, complete cds.
GenBankHQ5859924e-42HQ585992.1 Mangifera indica cultivar Tiang Yang Xiang Mango LEAFY-like protein (LFY) gene, complete cds.
GenBankHQ5859934e-42HQ585993.1 Mangifera indica cultivar Zihua LEAFY-like protein (LFY) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016192636.20.0protein UNIFOLIATA-like
SwissprotO040641e-144FLLH_POPTR; Floricaula/leafy homolog
SwissprotO485591e-144UNI_PEA; Protein UNIFOLIATA
TrEMBLA0A444ZY960.0A0A444ZY96_ARAHY; Uncharacterized protein
STRINGXP_004501760.11e-148(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-76floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]