PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.6VX9H
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 553aa    MW: 60114.6 Da    PI: 5.5879
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.6VX9HgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.51e-12404450455
                  HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                  +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI +Lq
  Araip.6VX9H 404 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 450
                  799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.7E-4190276IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.831400449IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.27E-14403454No hitNo description
SuperFamilySSF474594.58E-18403465IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.2E-18404463IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-10404450IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-14406455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
RSEVFSNLIN LFSSMFKLLL PHQIPKTLQE LLPLEKIMSE KFCVSDEDKG VLESVLGAEA  60
VAYFVSAVSN NFFSSVVASA SALAGTDAGL RRRLCQVLEG SKWNYAVFWQ VAGLKSGGSA  120
LIWGDGQCCD PKGGGAGEGG SEGDWSGVSK GDEEELRKKV LQKLDAYFAC SVSKEANYAR  180
LDRVSDLHMF YLASMYYIFG FDSPCGPGGS FKSGKSIWVS DSASCSNQLE SRSFLGRSAG  240
LQTVVFVPLK AGVVELGSVE TVPEDQGVLD LVRTAFGESS SGQAKAFPKI FGRELSVGGG  300
DAKSQSITIS FSPKLEDDSG FTSDSYEVQA LAANHGYGNP SNGSMGENSE AKLFPQMIGG  360
NYNAQTRVSS LDLGNEDSSS THLDERKPRK RGRKPANGRE EPLNHVEAER QRREKLNQRF  420
YALRAVVPNI SKMDKASLLG DAITYITDLQ MKIKVLETEK NMNNNNEPMF PFSDIDFQAR  480
EDDTAVVRVS CPLDLHPVSR VIKTFQEHQI MAPESGVSTS EGKMIHTFSI RAQGSEAAAI  540
QLKEKLEASL SKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A3e-28398460264Transcription factor MYC2
5gnj_B3e-28398460264Transcription factor MYC2
5gnj_E3e-28398460264Transcription factor MYC2
5gnj_F3e-28398460264Transcription factor MYC2
5gnj_G3e-28398460264Transcription factor MYC2
5gnj_I3e-28398460264Transcription factor MYC2
5gnj_M3e-28398460264Transcription factor MYC2
5gnj_N3e-28398460264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1385393RKPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.6VX9H
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016183130.10.0transcription factor bHLH3
RefseqXP_025632357.10.0transcription factor bHLH3
SwissprotA0A3Q7H2161e-172MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A445AEP30.0A0A445AEP3_ARAHY; Uncharacterized protein
STRINGGLYMA13G18131.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-141bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]