PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.6L19K

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

bZIP

Protein Properties

Length: 425aa MW: 45496 Da PI: 6.8052

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.6L19K	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	71.8	1e-22	280	342	1	63
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkrerrkq+NRe+ArrsR+RK+ae eeL++kv++L+aeN +Lk+e+++l++ ++kl+ e+ Araip.6L19K 280 ERELKRERRKQSNRESARRSRLRKQAEAEELARKVENLTAENVSLKSEINQLSDSSEKLRVEN 342 89*********************************************************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	7.5E-36	1	99	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	5.8E-25	133	259	No hit	No description
Gene3D	G3DSA:1.20.5.170	1.8E-17	273	339	No hit	No description
Pfam	PF00170	1.0E-20	280	342	IPR004827	Basic-leucine zipper domain
SMART	SM00338	2.9E-21	280	344	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	13.38	282	345	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.44E-10	283	338	No hit	No description
CDD	cd14702	1.61E-19	285	332	No hit	No description
PROSITE pattern	PS00036	0	287	302	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0005829	Cellular Component	cytosol
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MGNSEEGKST KIEKSSSPVA TDQTNQTNQQ NIHVYPDWSA MQAYYGPRVN MPPYYNSAVA 60 NGHAPHPYMW GPPQPMMPPY GPPYAAIYSH GGVYAHPAVA IGPHAHGQGV PTSPAAGTPS 120 SVETPTKLSG NTDQGLMKKL KGFDGLAMSI GNGNTGSAER GAENRLSQSV DTEGSSDGSD 180 GNTAGTNQTR KRRRDGTPTT DGEGKTEIQD SPAPKENAAN KTIATAPISI TGTLAAPVVS 240 SGMTTALELM NPASLHPRTN SPNGPQPCAV MPSEAWIQNE RELKRERRKQ SNRESARRSR 300 LRKQAEAEEL ARKVENLTAE NVSLKSEINQ LSDSSEKLRV ENTTLREKLK NAQLGPADEI 360 VLNNTDSNRA TPVSTENLLS RVNNNSSSDD RTAEETDFCE NKSNSGAKLH QLMDTNPRAD 420 AVAAG

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MGNSEEGKST KIEKSSSPVA TDQTNQTNQQ NIHVYPDWSA MQAYYGPRVN MPPYYNSAVA  60
NGHAPHPYMW GPPQPMMPPY GPPYAAIYSH GGVYAHPAVA IGPHAHGQGV PTSPAAGTPS  120
SVETPTKLSG NTDQGLMKKL KGFDGLAMSI GNGNTGSAER GAENRLSQSV DTEGSSDGSD  180
GNTAGTNQTR KRRRDGTPTT DGEGKTEIQD SPAPKENAAN KTIATAPISI TGTLAAPVVS  240
SGMTTALELM NPASLHPRTN SPNGPQPCAV MPSEAWIQNE RELKRERRKQ SNRESARRSR  300
LRKQAEAEEL ARKVENLTAE NVSLKSEINQ LSDSSEKLRV ENTTLREKLK NAQLGPADEI  360
VLNNTDSNRA TPVSTENLLS RVNNNSSSDD RTAEETDFCE NKSNSGAKLH QLMDTNPRAD  420
AVAAG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	189	193	RKRRR
2	296	302	RRSRLRK
3	296	303	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00318	DAP	Transfer from AT2G46270	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.6L19K

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By light.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016180367.1	0.0	common plant regulatory factor 1
Refseq	XP_025631576.1	0.0	common plant regulatory factor 1
Swissprot	Q99089	1e-143	CPRF1_PETCR; Common plant regulatory factor 1
TrEMBL	A0A151SSC1	0.0	A0A151SSC1_CAJCA; Common plant regulatory factor 1
STRING	GLYMA16G03190.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5301	34	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46270.1	1e-103	G-box binding factor 3

Publications ? help Back to Top
Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness. EMBO J., 1991. 10(7): p. 1777-86 [PMID:2050115] Feldbrügge M,Hahlbrock K,Weisshaar B The transcriptional regulator CPRF1: expression analysis and gene structure. Mol. Gen. Genet., 1996. 251(6): p. 619-27 [PMID:8757392]