PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.4D1GB
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 741aa    MW: 80471.9 Da    PI: 10.0238
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.4D1GBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.61.8e-103889246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46
                     + W t+E++ll+ av+++G ++W+t+a +++       +  t+ +c  ++++
      Araip.4D1GB 38 QVWGTWEELLLASAVNRHGFKDWDTVAMEVQsrtsvpnLQATALHCEQKFHD 89
                     68*****************************888888888888888888775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-43172IPR009057Homeodomain-like
SuperFamilySSF466893.23E-53373IPR009057Homeodomain-like
PfamPF002498.3E-93889IPR001005SANT/Myb domain
CDDcd001672.46E-54073No hitNo description
SMARTSM002974.9E-10369463IPR001487Bromodomain
SuperFamilySSF473701.96E-12374461IPR001487Bromodomain
CDDcd043699.26E-10379458No hitNo description
PfamPF004393.9E-6399447IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.7E-10400480IPR001487Bromodomain
PROSITE profilePS500149.132401444IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MVKPSSFSYH MENHQNNNPT RDPDLAEEEK KKRHQHPQVW GTWEELLLAS AVNRHGFKDW  60
DTVAMEVQSR TSVPNLQATA LHCEQKFHDL NLRFADQLND AVPPLLQNGA AAVDSSDHVP  120
WLDELRKLRV AELRREVQRS DVSILSLQLK VKKLEEEREK ENDGKVDEKA DLAVCGEARP  180
GNDGTGGERE VPEPTGSEPE IRRLDESTTN TDKLLPTTGD ESDRENQSVN ESNSTGSRFE  240
GGKTGAGDGD GKTGVGAVPV HPGPKEPDPV GRKRRPIGEE SNNGSYDTEV KVPTCESQPP  300
SEERKAEDGD SSELRDDSVG HSGEGGRGTR ESSEVQSSAS LTRKRKTRRR KEASGGSGGG  360
EVALESDETM VKSEPLIGLL EMIKAHEHSS LFERRLESQH VDLETIQSRL HKGHYSSSTN  420
SFFRDLLLLF TNATVFFTRD SLESTAAQQL RRLVMAEMKN QGQAQSDPTP QKTDSNPPNA  480
PQAKPESLLS KHKASAPILV CRKRSSMSSK PSPATFGQKG DQPVTDKKEK PSSDAKPPMK  540
PSSSETDEDE PPKAKEKPVT GARSLRRSNK NLSSNSNSGN KKLPTNSTIK AATLVTKAVE  600
AAKPDKSKAE GGQDKKKNAA ADFLKRIKRN APVEALKSGS GSGGGSSSSS RGGTASMKEQ  660
KKIVNSGKGD NKGKERASRH NNGGGGGSGD KRNKNVVENS KRSVGRPPKK TAESNTASAK  720
RGRENSASAS KDKRPKKRSK K
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341346TRKRKT
2344351RKTRRRKE
3732740KRPKKRSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.4D1GB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025669440.10.0uncharacterized protein LOC112769199 isoform X2
TrEMBLA0A444Y0W20.0A0A444Y0W2_ARAHY; Uncharacterized protein
STRINGXP_004488477.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18702972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.14e-33DNA-binding bromodomain-containing protein