PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.021VS

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

SBP

Protein Properties

Length: 1033aa MW: 113333 Da PI: 7.5236

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.021VS	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	127.5	5.3e-40	163	240	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqv++C++dls ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh+l+efDe+krsCrrrLa+hn+rrrk+++ Araip.021VS 163 VCQVQDCRVDLSGAKDYHRRHKVCDVHSKATKALVGNVMQRFCQQCSRFHALEEFDEGKRSCRRRLAGHNRRRRKTHP 240 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	1.3E-31	158	225	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	31.787	161	238	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.84E-37	162	242	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.5E-29	164	237	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	2.33E-7	813	917	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	4.4E-6	816	916	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	5.42E-8	816	915	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1033 aa Download sequence Send to blast
MEARFGGKNQ FLYGAVVPEM KGVGKRSLEW DLNDWRWDGD LFTAQQLNSV PSDCRSRQFF 60 PPNPEIHANN NAINASNSIS SSINPGEEGK RELEKKRRAV VIGEGEEREE LNDEGGGGGG 120 GGGSSLNLNL GAQVYPIMVE GDEKSGKKTK VVETAATTSN RAVCQVQDCR VDLSGAKDYH 180 RRHKVCDVHS KATKALVGNV MQRFCQQCSR FHALEEFDEG KRSCRRRLAG HNRRRRKTHP 240 DAAGVNGGSL NGERGSSYLL MSLLRILSNM HSNGSDNTRN QDILSHLLGN LANLAGTLNE 300 RSVASLLEGS QGLVNSRTPE AAHNVPNLNS NGPEASRPSG SSIKTGNGAI RQDPPRSMVQ 360 CEAAPSNAVT EKCLPLGHGA AANLKPSGIQ PSSNILLSRD SQPSQLIAAD TSVGRDHLNN 420 IDLNNVYDDT QDCAENPKKS SAPMGEVRSL DHPLWLQCNS LKSSPPQTSI NSDSTSTQSP 480 SSSSGEAQSR TDRIVFKLFG KDPSDFPHVL RSQILNWLSH SPTEIESYIR PGCIVLTIYL 540 RLEKSAWEEL SCNLGSSLSK LASNDSFWTT GWVYTRVQQS VAFLYNGQVV LDAPLHLRSP 600 QNCRISCIKP LAVPKNANAK FTVKGFNLFR SSTRMLCAFE GKYLVHDSSH DLIDVADVSD 660 AAIQHLSFSC QIPNVTGRGF LEVEDHGLSS CSFPFIVAEQ EICTEICKLE NVIEAADATD 720 DILLKSKQIE EKTRALEFLQ EMGWLLHRSR LNVRLGTLAP SQDPFHFNRF VWLVDFSMDH 780 DWCAVVKKLL DIIFEDGVDV GDHTSIELAL LDMGLLHKAV KRNSRPMVEL LLKFVPTKSS 840 AGATKFLFRP DNVGPAGLTP LHVAASMKGS ENVLDALTDD PGMVGIEAWK SARDNTGLTP 900 NDYASLRGYF SYIQLVQKNT NKRREGQHVL DIPGAIVDSN TKQKQLDVNR TSKLASLHTE 960 KIETTVMASQ CGLCQHRLAY GGTRAALVYR PAMLSLVAIA AVCVCVALLF KSSPKVYYVF 1020 QPFNWESLGY GYI

Sequence ? help Back to Top

Protein Sequence Length: 1033 aa Download sequence Send to blast

MEARFGGKNQ FLYGAVVPEM KGVGKRSLEW DLNDWRWDGD LFTAQQLNSV PSDCRSRQFF  60
PPNPEIHANN NAINASNSIS SSINPGEEGK RELEKKRRAV VIGEGEEREE LNDEGGGGGG  120
GGGSSLNLNL GAQVYPIMVE GDEKSGKKTK VVETAATTSN RAVCQVQDCR VDLSGAKDYH  180
RRHKVCDVHS KATKALVGNV MQRFCQQCSR FHALEEFDEG KRSCRRRLAG HNRRRRKTHP  240
DAAGVNGGSL NGERGSSYLL MSLLRILSNM HSNGSDNTRN QDILSHLLGN LANLAGTLNE  300
RSVASLLEGS QGLVNSRTPE AAHNVPNLNS NGPEASRPSG SSIKTGNGAI RQDPPRSMVQ  360
CEAAPSNAVT EKCLPLGHGA AANLKPSGIQ PSSNILLSRD SQPSQLIAAD TSVGRDHLNN  420
IDLNNVYDDT QDCAENPKKS SAPMGEVRSL DHPLWLQCNS LKSSPPQTSI NSDSTSTQSP  480
SSSSGEAQSR TDRIVFKLFG KDPSDFPHVL RSQILNWLSH SPTEIESYIR PGCIVLTIYL  540
RLEKSAWEEL SCNLGSSLSK LASNDSFWTT GWVYTRVQQS VAFLYNGQVV LDAPLHLRSP  600
QNCRISCIKP LAVPKNANAK FTVKGFNLFR SSTRMLCAFE GKYLVHDSSH DLIDVADVSD  660
AAIQHLSFSC QIPNVTGRGF LEVEDHGLSS CSFPFIVAEQ EICTEICKLE NVIEAADATD  720
DILLKSKQIE EKTRALEFLQ EMGWLLHRSR LNVRLGTLAP SQDPFHFNRF VWLVDFSMDH  780
DWCAVVKKLL DIIFEDGVDV GDHTSIELAL LDMGLLHKAV KRNSRPMVEL LLKFVPTKSS  840
AGATKFLFRP DNVGPAGLTP LHVAASMKGS ENVLDALTDD PGMVGIEAWK SARDNTGLTP  900
NDYASLRGYF SYIQLVQKNT NKRREGQHVL DIPGAIVDSN TKQKQLDVNR TSKLASLHTE  960
KIETTVMASQ CGLCQHRLAY GGTRAALVYR PAMLSLVAIA AVCVCVALLF KSSPKVYYVF  1020
QPFNWESLGY GYI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-28	163	237	10	84	squamosa promoter binding protein-like 4
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.021VS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF312222	0.0	KF312222.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016194377.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
Refseq	XP_025629585.1	0.0	squamosa promoter-binding-like protein 1 isoform X1
TrEMBL	A0A445AYZ2	0.0	A0A445AYZ2_ARAHY; Uncharacterized protein
STRING	GLYMA09G09790.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1