PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.7166s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MIKC_MADS
Protein Properties Length: 336aa    MW: 38271.9 Da    PI: 4.7373
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.7166s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.43.4e-27958150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l  +s
  Araha.7166s0007.1.p  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLSLFS 58
                         79*******************************************98776 PP
2K-box19.44.3e-08121191979
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                          + +++ e+l++e+ +L++++++ ++e+R++  + +   +++e +  e+qL + l+++ +++++l+ ++++ 
  Araha.7166s0007.1.p 121 AINSDVEELEHEVCRLQQQLQMAEEELRRYEPDPVRFTTMEEYEVCEKQLLDTLTHVVQRRDHLMSNHLSS 191
                          5567899************************************************************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.156161IPR002100Transcription factor, MADS-box
CDDcd002656.52E-35275No hitNo description
SuperFamilySSF554556.41E-29282IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-25323IPR002100Transcription factor, MADS-box
PfamPF003196.6E-251055IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-253859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SNRLSLFSGK  60
TRIEDVFTRF INLPKQERES ALYFPDQNRR PDIQNKECLL RILQQLKSEN DIALQLTNPA  120
AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPVRFTTM EEYEVCEKQL LDTLTHVVQR  180
RDHLMSNHLS SYEASTMQQS IGGPFVNDVV EGWLPENGPY QTHLFDASAH SNQLRELSSA  240
MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HGGVGPSIEE  300
MMPAQQSDIP AVTAEAQPDR EVSDYETKVP QLSSQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3mu6_A2e-16270168Myocyte-specific enhancer factor 2A
3mu6_B2e-16270168Myocyte-specific enhancer factor 2A
3mu6_C2e-16270168Myocyte-specific enhancer factor 2A
3mu6_D2e-16270168Myocyte-specific enhancer factor 2A
6bz1_A3e-16190191MEF2 CHIMERA
6bz1_B3e-16190191MEF2 CHIMERA
6bz1_C3e-16190191MEF2 CHIMERA
6bz1_D3e-16190191MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.7166s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ0564570.0DQ056457.1 Arabidopsis thaliana MADS-box family protein (At1g22130) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002893213.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM460.0AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLD7KL040.0D7KL04_ARALL; Predicted protein
STRINGAl_scaffold_0001_23200.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.10.0AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]