PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.5826s0004.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

Protein Properties

Length: 332aa MW: 38491.9 Da PI: 6.2967

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.5826s0004.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	60.6	2.6e-19	11	104	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrs 88 ffkv+ ++s+ lv+p f+ ++ ++ke +k+ l de gr W v+ + + + +r ++++kGW++F++++ L+ gDf+vF++dg+s Araha.5826s0004.1.p 11 FFKVF--LPEFSSHELVIPPAFI-DI-LDKELPKEAFLVDEIGRLWCVETKTEDTEERfcVLFKKGWESFANDQSLEFGDFLVFRYDGDS 96 88999..889999********.66.457899*************887777778999************************99 PP EE..EEEEE- CS B3 89 efelvvkvfr 98 +f v++f Araha.5826s0004.1.p 97 RF--SVTIFA 104 99..888886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	7.9E-22	9	108	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	13.888	9	106	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.12E-21	10	108	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.44E-17	11	103	No hit	No description
Pfam	PF02362	1.6E-17	11	104	IPR003340	B3 DNA binding domain
SMART	SM01019	1.5E-20	11	106	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	3.0E-14	212	312	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	4.12E-14	213	301	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.221	217	316	IPR003340	B3 DNA binding domain
CDD	cd10017	3.91E-8	218	312	No hit	No description
SMART	SM01019	9.1E-12	220	316	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.5E-7	228	312	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MVEETAKDLE FFKVFLPEFS SHELVIPPAF IDILDKELPK EAFLVDEIGR LWCVETKTED 60 TEERFCVLFK KGWESFANDQ SLEFGDFLVF RYDGDSRFSV TIFAKDGCKK DIGVVTTTDR 120 SRVSVDEKEP VDISTEPELR KDCGHRINQK RKRDSVNEDP RVMVNNKPDY VSTNKTKPEH 180 REKTQRTVNR AGDPCDISWC PEKEHNGFEE SVYKPKHPHF LRNITIASLQ KLEIPLTFLR 240 SNGIELEEEV ELCDEDGKKW PLKIVNHGRG VKFSHESWLC FCKSHNMMLT HKCLFEFIVP 300 SNGRCNEIQV RIVSGRLPTT MTRHKYQVLA M*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.5826s0004.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB026640	1e-170	AB026640.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K8A10.
GenBank	CP002688	1e-170	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002866723.1	0.0	putative B3 domain-containing protein At5g66980
Swissprot	Q9FGD2	0.0	Y5698_ARATH; Putative B3 domain-containing protein At5g66980
TrEMBL	D7MLD4	0.0	D7MLD4_ARALL; Transcriptional factor B3 family protein
STRING	fgenesh2_kg.8__2718__AT5G66980.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12802	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	0.0	B3 family protein

Link Out ? help Back to Top
Phytozome	Araha.5826s0004.1.p

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]