PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araha.3152s0007.1.p
Organism
Arabidopsis halleri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ARR-B
Protein Properties Length: 629aa    MW: 68954.9 Da    PI: 6.7409
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araha.3152s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like911.1e-28165218155
              G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                          kpr++W+ eLH++Fv av+qL G +kA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  Araha.3152s0007.1.p 165 KPRVVWSVELHQQFVAAVNQL-GVDKAVPKKILEMMNVPGLTRENVASHLQKYRI 218
                          79*******************.********************************7 PP
2Response_reg56.12.1e-1938726109
                          EEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
         Response_reg  26 vaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                          v+ +  +e al ll++++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ +l+ +  Ga d+l Kp+ +e+l +
  Araha.3152s0007.1.p   3 VTKCNRAEIALSLLRKNKngFDIVISDVHMPDMDGFKLLEHVGLEM-DLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEALKN 87 
                          778889999*****988889**********************6644.8**********************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011031.763193IPR001789Signal transduction response regulator, receiver domain
CDDcd001562.40E-19192No hitNo description
SMARTSM004481.1E-4189IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23002.1E-292126No hitNo description
SuperFamilySSF521726.55E-242101IPR011006CheY-like superfamily
PIRSFPIRSF0363922.4E-1762620IPR017053Response regulator B-type, plant
PfamPF000727.6E-16387IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129411.323162221IPR017930Myb domain
SuperFamilySSF466896.81E-20163222IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-30164223IPR009057Homeodomain-like
TIGRFAMsTIGR015572.6E-24165218IPR006447Myb domain, plants
PfamPF002499.6E-9167217IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
ITVTKCNRAE IALSLLRKNK NGFDIVISDV HMPDMDGFKL LEHVGLEMDL PVIMMSADDS  60
KSVVLKGVTH GAVDYLIKPV RIEALKNIWQ HVVRKKRNEW NVSEHSGGSI EDTGGDRDRQ  120
QQQREDADNN SSSVNEGNWR NSRKRKEEEV DDQGDDKEDT SSLKKPRVVW SVELHQQFVA  180
AVNQLGVDKA VPKKILEMMN VPGLTRENVA SHLQKYRIYL RRLGGVSQHQ GNMNHSFMTG  240
QDQSFGPLSS LNGFDLQDLA FAGQLPAQSL AQFQAAGLGR PTLTKPGMSV SPLVDQRTIF  300
NFENPKIRFG DGHGPTMNNG NKQMNLLNGV PTGMEPKQFA GSHMRVQQQI TGVRPGQNVQ  360
SSGMMLPVAD QLPRGGPSML PSLGQQPILS SSVSRRSDLT GAVAARNSIP ETNNRVLPTT  420
HSVFNNFPSD LPRNSFPLAS APGISVPVSA SYQEEVNSSD ARGGSSAATA ATAGFGNPSY  480
DIFNDFPHHQ QHNNNISNKL NDWDLRNMGL VFSSNQDAAA ATAAFSSSSS TQRKRRETDA  540
TVVAEHGQNI HPPSRNLNHL NHVYMDGGSV RVKSERVADT VTCPPANTLF QEQYNQEDLM  600
SAFLKQEGIP SVDNEFDFDG YSIDNIPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-21161223163ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraha.3152s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4735210.0DQ473521.1 Arabidopsis thaliana ARR2 (ARR2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002870182.10.0two-component response regulator ARR2 isoform X1
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLD7MA810.0D7MA81_ARALL; Two-component response regulator
STRINGscaffold_702902.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24032773
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]