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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Araha.23363s0006.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family |
CO-like |
Protein Properties |
Length: 403aa MW: 45933.5 Da PI: 5.4045 |
Description |
CO-like family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Araha.23363s0006.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-B_box | 20.4 | 1e-06 | 14 | 57 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
+r C+ + + +++++C + +lC+ C + H+ H++v
Araha.23363s0006.1.p 14 ARACDSCVKRRARWYCSAGDAFLCHACDGSVHSAnplarrHERV 57
578*****************************657888888876 PP
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2 | CCT | 57.9 | 3.7e-20 | 362 | 399 | 1 | 38 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKG 38
Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KG
Araha.23363s0006.1.p 362 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKG 399
9************************************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 403 aa
Download sequence Send
to blast |
MMKSLASAVG GKTARACDSC VKRRARWYCS AGDAFLCHAC DGSVHSANPL ARRHERVRLK 60 SASSGKHRHA SSSSPSHQST WHQGFTRKAR TPRGGKKSHT MVFHDLVPEM STEDQAESYE 120 VEEQLIFEVP VMNPMVEEHC FNQSVETKVE FPMMPLSFKC SDEEDEDNAE SCLNGLFPTD 180 MELAQFTADV ETLLGGGMER EFHSIEELGL GEVLKIEKEE VEEEEVVVTR EVFDLDEAEE 240 TSPFEISFDY EFAHKTTYEE EEEEDKKEDV MKNRMDVVVN EMSGRIKEEK KEKALMLRLD 300 YESVISTWKG QGIPWTDREP SEIDLDMVCC PTHSLGESGE AHHHTHFRGL GLHMGEAGDG 360 GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGS QK*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 372 | 388 | RRTRLFSKKIRYEVRKL |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY054625 | 0.0 | AY054625.1 Arabidopsis thaliana putative B-box zinc finger protein (At1g68520; T26J14.9) mRNA, complete cds. |
GenBank | AY081541 | 0.0 | AY081541.1 Arabidopsis thaliana putative B-box zinc finger protein (At1g68520) mRNA, complete cds. |