PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araha.1744s0003.1.p

Organism

Arabidopsis halleri

Taxonomic ID

81970

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

C2H2

Protein Properties

Length: 387aa MW: 43613.4 Da PI: 6.8902

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araha.1744s0003.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	220	239	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ Araha.1744s0003.1.p 220 FSCPVCFKTFNRYNNMQMHM 239 89*****************9 PP
2	zf-C2H2	14.4	0.00011	304	326	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ Araha.1744s0003.1.p 304 FMCRKCGKAFAVRGDWRTHEKNC 326 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	5.6E-6	220	239	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.38	220	242	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.64	220	247	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	222	242	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.9E-6	286	324	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.1E-5	300	324	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	8.808	304	324	IPR007087	Zinc finger, C2H2
SMART	SM00355	49	304	324	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009860	Biological Process	pollen tube growth
GO:0010500	Biological Process	transmitting tissue development
GO:1990058	Biological Process	fruit replum development
GO:0005634	Cellular Component	nucleus
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MTDPYSNFFT DWFKSNPFHH YPNSSTNPSS HPHPPPLPLP PPSSFFFFPQ SGDLRRPPPP 60 PTPPPSPPLR EALPLLSLSP ANKQQDHHHN HDHLIQEPPS TSMDVDYDHH HQDDHHNLDE 120 DDHDVTVALH IGLPSPSATE MASLLMMSSS SSSSRTTHHH EDMNHKKDLD HDYSHGAAGG 180 GEDDDEDSVG GDGGCRISRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQMHMW 240 GHGSQYRKGP ESLRGTQPTG MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG 300 IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGNGHGAYGI 360 DGFDEEDEPA SEVEQLDNDH ESMQSK*

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MTDPYSNFFT DWFKSNPFHH YPNSSTNPSS HPHPPPLPLP PPSSFFFFPQ SGDLRRPPPP  60
PTPPPSPPLR EALPLLSLSP ANKQQDHHHN HDHLIQEPPS TSMDVDYDHH HQDDHHNLDE  120
DDHDVTVALH IGLPSPSATE MASLLMMSSS SSSSRTTHHH EDMNHKKDLD HDYSHGAAGG  180
GEDDDEDSVG GDGGCRISRL NKGQYWIPTP SQILIGPTQF SCPVCFKTFN RYNNMQMHMW  240
GHGSQYRKGP ESLRGTQPTG MLRLPCYCCA PGCRNNIDHP RAKPLKDFRT LQTHYKRKHG  300
IKPFMCRKCG KAFAVRGDWR THEKNCGKLW YCICGSDFKH KRSLKDHIKA FGNGHGAYGI  360
DGFDEEDEPA SEVEQLDNDH ESMQSK*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araha.1744s0003.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF254447	0.0	AF254447.1 Arabidopsis thaliana WIP2 protein (WIP2) mRNA, complete cds.
GenBank	BT021089	0.0	BT021089.1 Arabidopsis thaliana At3g57670 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_191326.1	0.0	C2H2-type zinc finger family protein
Swissprot	Q9SVY1	0.0	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A178VLW5	0.0	A0A178VLW5_ARATH; WIP2
STRING	AT3G57670.1	0.0	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	0.0	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Araha.1744s0003.1.p

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]