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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.Z4K97 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 493aa MW: 54986.3 Da PI: 4.9625 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 106.7 | 2.8e-33 | 132 | 271 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevd..iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.....sgyWkat 86 lp+G++F+P+d+e++++ L+k ++ + ++++ + evd i++++P++Lp vk++ + ++fF+++ k+y+tg+rk+r+++ + +W++t Aradu.Z4K97 132 LPKGVKFDPSDQEIISHLLAKVGAAGSephpfIDEFIATLEVDdgICYTHPKHLP-GVKQDGSATHFFHRSIKAYNTGNRKRRKINdqdsgDVRWHKT 228 799************777776644444577665554554455345**********.777888999******************85545544778**** PP NAM 87 gkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 gk+k+v+s +g + g+kk++v+y + r k+ekt+Wvmh+y+l Aradu.Z4K97 229 GKTKPVIS-DGVQRGCKKIMVLYmtSVRGVKAEKTNWVMHQYHL 271 ********.99************6656999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.88E-37 | 122 | 290 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.182 | 132 | 290 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.2E-14 | 133 | 271 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 493 aa Download sequence Send to blast |
MAGSSWLVDK SRIATKIKSA SGASGKVLWK SNPTRTCPNC QHVIDNSDVA FTITCSPSPS 60 SHLCFHYCAC VPFIYSSFHD FFDHDSVTLA GATNFIGSVV LWILIFLYEA RHMKIFERAT 120 VTVQVAQEWP GLPKGVKFDP SDQEIISHLL AKVGAAGSEP HPFIDEFIAT LEVDDGICYT 180 HPKHLPGVKQ DGSATHFFHR SIKAYNTGNR KRRKINDQDS GDVRWHKTGK TKPVISDGVQ 240 RGCKKIMVLY MTSVRGVKAE KTNWVMHQYH LGTDEDEKEG EYVISKVFYQ QQVKFAEKDD 300 HDVPGTNEAT VVKDDPVTSE PPHSEKQCSD LDIGEKSHQI PQGPQTDCVE DIQAECEEIV 360 KTDVAMADAQ NNEGMDNVEN NADGEQKWWD SESQNLLDSQ QLVEALALCD DLLHSQCSNK 420 DDENVEHKEH LSLSIYAHLG PEHLKKDLEE CQNLNLDPAN VELETPPSEF RLSQLEFGSQ 480 DSFVSLSGGK AVD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.Z4K97 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015942763.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-127 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A445BCI9 | 0.0 | A0A445BCI9_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA20G32690.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5662 | 33 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25580.1 | 1e-130 | NAC family protein |