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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.YZ7HA | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 390aa MW: 42606.8 Da PI: 5.7981 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.8 | 2.6e-29 | 195 | 253 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+ +++t++g Hnh+ Aradu.YZ7HA 195 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERDRSDPTKFIVTFTGVHNHP 253 79*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.3E-29 | 183 | 255 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 34.119 | 189 | 255 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-25 | 189 | 255 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.2E-34 | 194 | 254 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.5E-24 | 196 | 253 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
SYLSLSLSLS LSLKPYKKSA PSFVPFLTPT HLLQTLSLTL LFNMDDDWDL HAVVRGCATI 60 SSTSSTTTTT TSTTTTSYQP PPSSSCGFFN EQQSNVFSVS NNNPFELRSS IQELQHNHNL 120 CKPFFFKSQP FQSFQSSSSS SSPPNSALTQ HKQQQQNCNN GKNPHHAGSA TTPRSKRRKN 180 QLKNVCQVSA ENLSSDVWAW RKYGQKPIKG SPYPRGYYRC SSSKGCLARK QVERDRSDPT 240 KFIVTFTGVH NHPAPTHRNS LAGSSRQKLQ TPEIATTGDT EMVLTMKPVS ILASPSTSGV 300 EEEAETEATP AQKSESEEDN MEDYLMNDDD GGFEETEFGS PDMEITDDFF EGLDELTTAT 360 DGDSCFSTSV PNPSLPPFVA NSAATAAGGS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 9e-18 | 179 | 256 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 9e-18 | 179 | 256 | 2 | 80 | Disease resistance protein RRS1 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.YZ7HA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015042 | 5e-36 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015947783.1 | 0.0 | WRKY transcription factor 22-like | ||||
TrEMBL | A0A445EIF4 | 0.0 | A0A445EIF4_ARAHY; Uncharacterized protein | ||||
STRING | GLYMA16G03570.1 | 1e-105 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4205 | 32 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 8e-64 | WRKY family protein |