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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Aradu.XV2LW | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 350aa MW: 39551 Da PI: 6.7876 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 83.9 | 1.7e-26 | 198 | 252 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56
kpr Wtpe H+ Fv+av qL G++kA+Pk+ilelm++++Lt+e+v+SHLQkYR++
Aradu.XV2LW 198 KPRFIWTPERHQMFVDAVLQL-GIDKAVPKKILELMDIPDLTRENVASHLQKYRMH 252
79*******************.********************************96 PP
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| 2 | Response_reg | 53.1 | 1.8e-18 | 35 | 149 | 1 | 110 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTT.S.EHHHHHHHHHHHTTTSEEEEEESTTT..HHHHHHHH. CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempg.m.dGlellkeireeepklpiivvtahge..eedaleal. 90
+l+vd +p ++l++ ++ + +y +v+++ +g+ al+ll+e+ +D++l+D+ mpg m dG++ll + +e ++p++++ a+++ ++ + e +
Aradu.XV2LW 35 LLVVDHDPEHLRLIQDMAFQCNY-QVTTCFEGSHALNLLRESSgcFDVVLCDVHMPGiMdDGSRLLDHVLQEF-NIPVVMMCATDDesSSAVMEGMk 129
599********************.*********************************636*********8888.799988886655457889999*9 PP
HTTESEEEESS--HHHHHHH CS
Response_reg 91 kaGakdflsKpfdpeelvka 110
k Ga l+Kp ++++l+++
Aradu.XV2LW 130 KKGACYNLVKPLSEQDLRNM 149
9***************9986 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SMART | SM00448 | 1.6E-11 | 33 | 150 | IPR001789 | Signal transduction response regulator, receiver domain |
| Gene3D | G3DSA:3.40.50.2300 | 4.3E-25 | 33 | 178 | No hit | No description |
| SuperFamily | SSF52172 | 4.13E-22 | 33 | 157 | IPR011006 | CheY-like superfamily |
| PROSITE profile | PS50110 | 28.811 | 34 | 154 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 6.38E-16 | 36 | 153 | No hit | No description |
| Pfam | PF00072 | 5.4E-14 | 36 | 149 | IPR001789 | Signal transduction response regulator, receiver domain |
| SuperFamily | SSF46689 | 5.08E-20 | 196 | 254 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 3.5E-28 | 196 | 255 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 8.2E-24 | 198 | 252 | IPR006447 | Myb domain, plants |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 350 aa Download sequence Send to blast |
MAANNNPHSL TDQNANSMLP PILDHQFSTT PALRLLVVDH DPEHLRLIQD MAFQCNYQVT 60 TCFEGSHALN LLRESSGCFD VVLCDVHMPG IMDDGSRLLD HVLQEFNIPV VMMCATDDES 120 SSAVMEGMKK KGACYNLVKP LSEQDLRNMW QNVVEKTQKE VCYDDDESKG TVNRRKRSLS 180 TERDDHDHDV QSNTPNKKPR FIWTPERHQM FVDAVLQLGI DKAVPKKILE LMDIPDLTRE 240 NVASHLQKYR MHLKQKSEET MQTNIIGKLN VNREANKQLC APLRVQATTN VPQIPQTLPL 300 HHQYYSSLSV PTVSAAPHAL KFLNSNSFGL INNNGIVGSN MINSGKKERT |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5lxu_A | 8e-20 | 198 | 254 | 1 | 57 | Transcription factor LUX |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Aradu.XV2LW |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015957169.1 | 0.0 | two-component response regulator ARR14-like | ||||
| Swissprot | Q9ZWJ9 | 1e-54 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
| TrEMBL | A0A445DNI2 | 0.0 | A0A445DNI2_ARAHY; Uncharacterized protein | ||||
| STRING | evm.model.supercontig_2.186 | 3e-69 | (Carica papaya) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF20954 | 2 | 4 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G16110.1 | 5e-57 | response regulator 2 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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