PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.WC8FK | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 90aa MW: 10296.1 Da PI: 9.846 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.9 | 1.1e-13 | 22 | 65 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ Ede+l+ +++++G g+W+++++ g+ R++k+c +rw +yl Aradu.WC8FK 22 SPKEDEKLLMYITKYGHGCWSSVPKQAGLQRSGKSCSLRWINYL 65 789***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.005 | 13 | 69 | IPR017930 | Myb domain |
SMART | SM00717 | 2.7E-6 | 17 | 67 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-18 | 22 | 70 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.5E-13 | 22 | 74 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.89E-9 | 22 | 65 | No hit | No description |
Pfam | PF00249 | 1.3E-11 | 22 | 65 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
MNNNGKTLLL LQAEASEGSM VSPKEDEKLL MYITKYGHGC WSSVPKQAGL QRSGKSCSLR 60 WINYLRPDLK FGIFLLLLFS LQPQFRYLLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.WC8FK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018453030.1 | 2e-28 | PREDICTED: transcription factor MYB86 isoform X2 | ||||
Swissprot | Q8LPH6 | 1e-25 | MYB86_ARATH; Transcription factor MYB86 | ||||
TrEMBL | A0A2I0HV64 | 3e-27 | A0A2I0HV64_PUNGR; Uncharacterized protein | ||||
TrEMBL | D8RDI4 | 3e-27 | D8RDI4_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ29750 | 5e-28 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01680.3 | 8e-28 | myb domain protein 55 |