PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.U1JXN | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | WRKY | ||||||||
Protein Properties | Length: 192aa MW: 21953.5 Da PI: 7.9358 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.3 | 1.1e-31 | 106 | 164 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK++kgse+prsYYrC+s gC ++k+vers++dp+v+++tY+ eH+h+ Aradu.U1JXN 106 SDGWAWRKYGQKPIKGSEYPRSYYRCSSCkGCLARKQVERSHSDPQVFIVTYTAEHTHP 164 6*************************9988****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.3E-30 | 105 | 164 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-26 | 105 | 165 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.0E-36 | 105 | 165 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.918 | 106 | 166 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.9E-27 | 107 | 164 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MDWDLHAIVR GCTNTHQPDN ILGDLNYFQL SPQQEIDERF FKSHQFSETE TITTAIVDDE 60 LEELYKPFYP STTVDTTTSS HPTSAEVNKV LHLKPSDPTP SKCKRSDGWA WRKYGQKPIK 120 GSEYPRSYYR CSSCKGCLAR KQVERSHSDP QVFIVTYTAE HTHPPHPITT IPTNSQAQGT 180 VVGRGWKRRT NL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 4e-17 | 106 | 163 | 15 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.U1JXN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016202141.1 | 1e-133 | probable WRKY transcription factor 29 | ||||
Refseq | XP_025653810.1 | 1e-133 | probable WRKY transcription factor 29 | ||||
Refseq | XP_029149016.1 | 1e-133 | probable WRKY transcription factor 29 | ||||
TrEMBL | A0A444Z8J6 | 1e-131 | A0A444Z8J6_ARAHY; Uncharacterized protein | ||||
STRING | XP_006476490.1 | 1e-46 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6217 | 31 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 9e-32 | WRKY family protein |