PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.TI0Z7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | NAC | ||||||||
Protein Properties | Length: 322aa MW: 36405 Da PI: 7.7423 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.3 | 1.1e-51 | 11 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhP+deelv++yL kk ++++ l + +vd++k+ePwd+p+++ + kewyf+++rd+kyatg r+nrat+sgyWkatgkd+++l+ kg+ Aradu.TI0Z7 11 LPPGFRFHPKDEELVCDYLMKKFTHNESLL---MIDVDLNKCEPWDIPETACVGGKEWYFYTQRDRKYATGLRTNRATASGYWKATGKDRPILR-KGS 104 79**********************999544...789************7777799**************************************9.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 lvg++ktLvfy+grapkg+kt+Wvmhe+r+ Aradu.TI0Z7 105 LVGMRKTLVFYQGRAPKGRKTEWVMHEFRV 134 ****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-60 | 2 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.75 | 11 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.3E-27 | 12 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 322 aa Download sequence Send to blast |
MSNISLVEAR LPPGFRFHPK DEELVCDYLM KKFTHNESLL MIDVDLNKCE PWDIPETACV 60 GGKEWYFYTQ RDRKYATGLR TNRATASGYW KATGKDRPIL RKGSLVGMRK TLVFYQGRAP 120 KGRKTEWVMH EFRVEPPLPP PNTTSSKEDW VLCRVFYKNR EVGGKPNSMG SCYDDTGSSS 180 LPALMDSYIS FDQQQQPQTH LHADEYEQVP CFSIFSHTQT SPIFNHIMEP KLFPTNNNNN 240 NATLYGGGGT TTTPNLGSCL DPFSCDRKVL KAVLSQLTNM ERNIPNNNNN NTNSIKGSPS 300 LGEGSSESYL SEVGMPNLWN NY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-49 | 6 | 159 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-49 | 6 | 159 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-49 | 6 | 159 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-49 | 6 | 159 | 12 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-49 | 6 | 159 | 15 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-49 | 6 | 159 | 12 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-49 | 6 | 159 | 12 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.TI0Z7 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015932273.1 | 0.0 | NAC domain-containing protein 21/22 | ||||
Swissprot | Q84TE6 | 1e-124 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A445CH87 | 0.0 | A0A445CH87_ARAHY; Uncharacterized protein | ||||
STRING | XP_007149262.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10010 | 32 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-114 | NAC domain containing protein 1 |