PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aradu.RQE9Z | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
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Family | MYB_related | ||||||||
Protein Properties | Length: 665aa MW: 73022.1 Da PI: 10.2408 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.8 | 1.6e-10 | 38 | 89 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.......TTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg.......kgRtlkqcksrwqk 46 + W t+E++ll+ av+++G ++W+t+a +++ + t+ +c ++++ Aradu.RQE9Z 38 QVWGTWEELLLASAVNRHGFKDWDTVAMEVQsrtsvpnLQATALHCEQKFHD 89 68*****************************888888888888888888775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-4 | 32 | 72 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.24E-5 | 33 | 73 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.2E-9 | 38 | 89 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.14E-5 | 40 | 73 | No hit | No description |
SMART | SM00297 | 1.8E-11 | 329 | 423 | IPR001487 | Bromodomain |
SuperFamily | SSF47370 | 4.19E-13 | 334 | 421 | IPR001487 | Bromodomain |
CDD | cd04369 | 5.19E-10 | 339 | 418 | No hit | No description |
Pfam | PF00439 | 1.3E-6 | 359 | 408 | IPR001487 | Bromodomain |
Gene3D | G3DSA:1.20.920.10 | 5.4E-11 | 360 | 440 | IPR001487 | Bromodomain |
PROSITE profile | PS50014 | 9.145 | 361 | 404 | IPR001487 | Bromodomain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 665 aa Download sequence Send to blast |
MVKPSSFSYH MENHQNNNPT RDPDLAEEEK KKRNQHPQVW GTWEELLLAS AVNRHGFKDW 60 DTVAMEVQSR TSVPNLQATA LHCEQKFHDL NLRFADQLND AVPPLLQNGA ASVDSSDHVP 120 WLDELRKLRV AELRREVQQS DVSILSLQLK VKKLEEEREK ENDGKVDEKA DLAVCGEARP 180 GNDGTGGERE VPEPTGSEPE IRRLEESTTN TDKLLPTTGD ESDRENQSVN ESNSTGSRFE 240 GGKTGAGDGD GKTGVGAVPV HPGPKEPDPV GRKRRPIGEE SNNGSYDTEF QPASRSRQVR 300 RGRQRMTRRR KEASGGSGGG EVAPESDETM VKSEPLIGLL EMIKAHEHSS LFERRLESQH 360 VDLETIQSRL HKGHYSSSTN SFFRDLLLLF TNATVFFPRD SLESMAAQQL RRLVMAEMKN 420 QGQAQSDPSP QKTDSNPPNA PQAKPESLLS KHKASAPILV CRKRSSMSSK PSPATFGQKG 480 DQPITDKKEK PSSDAKPPMK PSSSETDEDE PPKAKEKPVT GARSLRRSNK NLSSNSNSGN 540 KKLPTNSTIK AGTLVTKAVE AAKPDKSKAE GGQDKKKNAA ADFLKRIKRN APGDNKGKER 600 ASRHNNGGGG GSGDKRNKNV VENSKRSVGR PPKKTAESNT ASAKRGRENS ASASKDKRPK 660 KRSKK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 656 | 664 | KRPKKRSKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Aradu.RQE9Z |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015932235.1 | 0.0 | uncharacterized protein LOC107458545 | ||||
TrEMBL | A0A445CEY2 | 0.0 | A0A445CEY2_ARAHY; Uncharacterized protein | ||||
STRING | XP_004488477.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1870 | 29 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44430.1 | 2e-67 | DNA-binding bromodomain-containing protein |